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shuffleseq |
The number of shuffled sequences output can be set by the '-shuffle' qualifier.
This makes two randomised copies of the input sequence:
% shuffleseq -shuffle 2 Shuffles a set of sequences maintaining composition Input sequence(s): tembl:L48662 output sequence(s) [l48662.fasta]: |
Go to the input files for this example
Go to the output files for this example
Standard (Mandatory) qualifiers:
[-sequence] seqall Sequence(s) filename and optional format, or
reference (input USA)
[-outseq] seqoutall [
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| Standard (Mandatory) qualifiers | Allowed values | Default | |
|---|---|---|---|
| [-sequence] (Parameter 1) |
Sequence(s) filename and optional format, or reference (input USA) | Readable sequence(s) | Required |
| [-outseq] (Parameter 2) |
Sequence set(s) filename and optional format (output USA) | Writeable sequence(s) | <*>.format |
| Additional (Optional) qualifiers | Allowed values | Default | |
| (none) | |||
| Advanced (Unprompted) qualifiers | Allowed values | Default | |
| -shuffle | Number of shuffles | Any integer value | 1 |
ID L48662; SV 1; linear; mRNA; STD; MUS; 366 BP.
XX
AC L48662;
XX
DT 04-NOV-1995 (Rel. 45, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 4)
XX
DE Mus musculus (cell line C3H/F2-11) chromosome 12 anti-DNA antibody heavy
DE chain mRNA.
XX
KW .
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC Muridae; Murinae; Mus.
XX
RN [1]
RP 1-366
RX PUBMED; 8814271.
RA Wloch M.K., Alexander A.L., Pippen A.M., Pisetsky D.S., Gilkeson G.S.;
RT "Differences in V kappa gene utilization and VH CDR3 sequence among
RT anti-DNA from C3H-lpr mice and lupus mice with nephritis";
RL Eur. J. Immunol. 26(9):2225-2233(1996).
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DR IMGT/LIGM; L48662; L48662.
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FH Key Location/Qualifiers
FH
FT source 1..366
FT /organism="Mus musculus"
FT /strain="C3H/HeJ-lpr/lpr"
FT /mol_type="mRNA"
FT /cell_line="C3H/F2-11"
FT /cell_type="hybridoma"
FT /tissue_type="spleen"
FT /db_xref="taxon:10090"
XX
SQ Sequence 366 BP; 100 A; 90 C; 85 G; 89 T; 2 other;
gagnnccagc tgcagcagtc tggacctgag ctggtaaagc ctggggcttc agtgaagatg 60
tcctgcaagg cttctggata cacattcact agctatgtta tgcactgggt gaatcagaag 120
cctgggcagg gccttgagtg gattggatat attaatcctt acaatgatgg tactaactac 180
aatgagaagt tcaaaggcaa ggccacactg acttcagaca aatcctccag cacagcctac 240
atggagttca gcagcctgac ctctgaggac tctgcggtct attactgtgc aagaaaaact 300
tcctactata gtaacctata ttactttgac tactggggcc aaggcaccac tctcacagtc 360
tcctca 366
//
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>L48662 L48662.1 Mus musculus (cell line C3H/F2-11) chromosome 12 anti-DNA antibody heavy chain mRNA. aggtttttatattacaagcatactaagagactcgcgatgatcgcacaattccaaatgtgc tcatgggtgtagcaagaacctcaaataaaagggcaaccatgagggtaaagtctccgcatg agcccctgggacgcgagagactttctcccgctagtgggtcgaacctgcagtgtcgataat tggagttaaaatcgcagcatttacggccatgaattgtgtcgatanacgattcacgcaatc gttaagatcaggttcattgggntcacaaaccgtaggccccccgttgcctgacgcgtaacg ttcggatttccgtgacttcatctgactactctgtcacattcttacacgacaagctcaaca agccgg >L48662 L48662.1 Mus musculus (cell line C3H/F2-11) chromosome 12 anti-DNA antibody heavy chain mRNA. gtggatggtatccctaacccatgacttgcgattccattgactaataccgatttcgctatg cgaataatactgcacaataagcgctgggggttggtttaaanttgcgatgtattatcaggt gcatcatacgcgtgtcttcaatcgcaggagaatacaaactcagtcccaagcctaaggcgc gtgagacttcattagggcaacggatactgctaactagttaaactcgcatgtaacaactca cctgagcggtcgtacatgggcctctcttcccgaagggttgttcgaaaaaagcattgatac aggccaggcaagcaccacgtgtcagcactacgatggccgttntcaaagtagctcatacag cctcgc |
Each run will produce a different sequence.
Note that these two sequences have the same name.
| Program name | Description |
|---|---|
| msbar | Mutate sequence beyond all recognition |