Bedtools intersect function arguments.
Spark context.
Bedtools intersect function arguments.
Spark context.
Spark context.
Bedtools intersect wrapper as a function FeatureRDD → FeatureRDD, for use in cannoli-shell or notebooks.
val args = new BedtoolsIntersectFnArgs() args.b = "foo.bed" args.useDocker = true val features = ... val pipedFeatures = new BedtoolsIntersectFn(args, sc).apply(features)