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| BoutrosLab.plotting.general-package | Boutros Lab general plotting functions |
| append.footnote | Appends Footnotes to Grid Objects |
| BoutrosLab.plotting.general | Boutros Lab general plotting functions |
| CNA | Copy number aberration (CNA) data from colon cancer patients |
| color.gradient | Creates a colour gradient |
| colour.gradient | Creates a colour gradient |
| covariates.grob | Create one or more covariate bars |
| create.barplot | Make a barplot |
| create.boxplot | Make a boxplot |
| create.colorkey | Create Colourkey |
| create.colourkey | Create Colourkey |
| create.dendrogram | Generate a dendrogram |
| create.densityplot | Make a density plot |
| create.dotmap | Make a dotmap with coloured background |
| create.heatmap | Make a heatmap |
| create.hexbinplot | Make a hexagonally binned plot |
| create.histogram | Make a histogram |
| create.manhattanplot | Make a Manhattan plot |
| create.multiplot | Joins plots together |
| create.polygonplot | Make a polygonplot |
| create.qqplot.comparison | Make a quantile-quantile plot of two samples |
| create.qqplot.fit | Make a quantile-quantile plot of a sample |
| create.qqplot.fit.confidence.interval | Create the confidence bands for a one-sample qq plot |
| create.scatterplot | Make a scatterplot |
| create.segplot | Make a segplot |
| create.stripplot | Make a strip-plot |
| create.violinplot | Make a violin plot |
| default.colors | Provides default colour schemes. |
| default.colours | Provides default colour schemes. |
| display.colors | Function to display R colors, as well as corresponding R grey colours. |
| display.colours | Function to display R colors, as well as corresponding R grey colours. |
| display.statistical.result | Utility function to display statistical result in a plot |
| dist | Distance Matrix Computation |
| force.color.scheme | Based on predefined colour schemes, returns a vector of corresponding colours. |
| force.colour.scheme | Based on predefined colour schemes, returns a vector of corresponding colours. |
| GarbageCollect | Force Garbage Collection |
| generate.at.final | Generates alternative default tick mark locations for create.densityplot() and create.scatterplot() |
| generate.filename | Generate a filename in the lab standard |
| get.corr.key | Correlation Key |
| get.correlation.p.and.corr | Calculate a correlation and its statistical significance |
| get.defaults | Get operating system specific default properties |
| get.line.breaks | Get line breaks |
| ks.test.critical.value | Critical Value for Kolmogorov-Smirnov Test |
| legend.grob | Generate a legend grob |
| ls.objects | List of objects |
| microarray | Microarray dataset of colon cancer patients |
| panel.BL.bwplot | A lattice::panel.bwplot replacement that fixes colouring issues |
| patient | Dataset describing qualities of 58 colon cancer patients |
| recode.vector | Recode Vector |
| save.session.profile | Save Session Profile |
| scientific.notation | Use scientific notation in plots |
| show.available.palettes | Display the available colour palettes |
| SNV | Single nucleotide variant (SNV) data from colon cancer patients |
| write.metadata | Writes Metadata |
| write.plot | Simplifies plotting by standardizing and centralizing all output-handling |