Alignment Stats
| Sequence pairs analysed in total |
9399055 |
| Paired-end alignments with a unique best hit |
7018098 |
| Pairs without alignments under any condition |
1722286 |
| Pairs that did not map uniquely |
658671 |
| Genomic sequence context not extractable (edges of chromosomes) |
6 |
|
|
Cytosine Methylation
| Total C's analysed |
264469464 |
| Methylated C's in CpG context |
8364359 |
| Methylated C's in CHG context |
755431 |
| Methylated C's in CHH context |
2166832 |
| Methylated C's in Unknown context |
535 |
| Unmethylated C's in CpG context |
3380818 |
| Unmethylated C's in CHG context |
57592010 |
| Unmethylated C's in CHH context |
192210014 |
| Unmethylated C's in Unknown context |
56967 |
| Percentage methylation (CpG context) |
71.2% |
| Percentage methylation (CHG context) |
1.3% |
| Percentage methylation (CHH context) |
1.1% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3544531 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
3473561 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
7018092 |
| Unique alignments |
6598101 |
| Duplicates removed |
419991 |
| Duplicated alignments were found at 338524 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
241956905 |
| Methylated C's in CpG context |
7173286 |
| Methylated C's in CHG context |
681193 |
| Methylated C's in CHH context |
1884937 |
| Unmethylated C's in CpG context |
2915868 |
| Unmethylated C's in CHG context |
52772247 |
| Unmethylated C's in CHH context |
176529374 |
| Percentage methylation (CpG context) |
71.1% |
| Percentage methylation (CHG context) |
1.3% |
| Percentage methylation (CHH context) |
1.1% |
|
|
M-Bias Plot
