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| arrays | Class "YAQCStats" |
| arrays-method | Class "YAQCStats" |
| avbg-method | Class "YAQCStats" |
| avns | Class "YAQCStats" |
| avns-method | Class "YAQCStats" |
| bio | Class "YaqcControlProbes" |
| bio-method | Class "YaqcControlProbes" |
| bio-methods | Class "YaqcControlProbes" |
| bioCalls | Class "YAQCStats" |
| bioCalls-method | Class "YAQCStats" |
| class:YaqcBioProbes | Class "YaqcControlProbes" |
| class:YaqcControlProbes | Class "YaqcControlProbes" |
| class:YaqcDegProbes | Class "YaqcControlProbes" |
| class:YaqcSpkProbes | Class "YaqcControlProbes" |
| class:YAQCStats | Class "YAQCStats" |
| deg | Class "YaqcControlProbes" |
| deg-method | Class "YaqcControlProbes" |
| deg-methods | Class "YaqcControlProbes" |
| gcosProbes | Class "YAQCStats" |
| gcosProbes-method | Class "YAQCStats" |
| getAllInt | Get the summerized MAS5 values for a given spike probe |
| getBioProbes | Get the names of the Bio spike probes on the array |
| getOutliers | Get outliers for the different YAQCStatsObject slots |
| getQCRatios | Compute qc probe ratios using GCOS intensity values |
| getRatioProbes | Get the names of degradation control probes on the array |
| getSpikeProbes | Get the names of all spike probes on the array |
| getYaqcControlProbes | Class "YAQCStats" |
| getYaqcControlProbes-method | Class "YAQCStats" |
| info | Class "YaqcControlProbes" |
| info-method | Class "YaqcControlProbes" |
| info<- | Class "YaqcControlProbes" |
| info<--method | Class "YaqcControlProbes" |
| isLog | Class "YAQCStats" |
| isLog-method | Class "YAQCStats" |
| merge-method | Class "YAQCStats" |
| method:yaqc | 'YAQCStats' constructor |
| minbg-method | Class "YAQCStats" |
| moreSpikeInProbes | Class "YAQCStats" |
| moreSpikeInProbes-method | Class "YAQCStats" |
| objectVersion | Class "YAQCStats" |
| objectVersion-method | Class "YAQCStats" |
| percent.present-method | Class "YAQCStats" |
| plot,YAQCStats | Plots a YAQCStats object |
| plot-method | Plots a YAQCStats object |
| probeSelectionInterface | Tcltk Interface to Generate an Instance of YaqcControlProbes for a given Chip Set |
| reprodPlot | Plot human whole genome GeneChips reproductibility |
| sfs-method | Class "YAQCStats" |
| show-method | Class "YAQCStats" |
| show-method | Class "YaqcControlProbes" |
| spk | Class "YaqcControlProbes" |
| spk-method | Class "YaqcControlProbes" |
| spk-methods | Class "YaqcControlProbes" |
| summary-method | Class "YAQCStats" |
| target-method | Class "YAQCStats" |
| yaqc | 'YAQCStats' constructor |
| yaqc-method | 'YAQCStats' constructor |
| yaqc-methods | 'YAQCStats' constructor |
| yaqc.affy | 'YAQCStats' constructor |
| yaqc.plot | Plots a YAQCStats object |
| yaqc.summary | Class "YAQCStats" |
| YaqcBioProbes-class | Class "YaqcControlProbes" |
| YaqcControlProbes-class | Class "YaqcControlProbes" |
| YaqcDegProbes-class | Class "YaqcControlProbes" |
| YaqcSpkProbes-class | Class "YaqcControlProbes" |
| YAQCStats-class | Class "YAQCStats" |