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| as.matrix | Convert to matrix |
| as.matrix-method | Convert to matrix |
| calcVarPart | Compute variance statistics |
| calcVarPart-method | Compute variance statistics |
| canCorPairs | canCorPairs |
| colinearityScore | Collinearity score |
| ESS | Effective sample size |
| ESS-method | Effective sample size |
| extractVarPart | Extract variance statistics |
| fitExtractVarPartModel | Fit linear (mixed) model, report variance fractions |
| fitExtractVarPartModel-method | Fit linear (mixed) model, report variance fractions |
| fitVarPartModel | Fit linear (mixed) model |
| fitVarPartModel-method | Fit linear (mixed) model |
| geneCounts | Simulation dataset for examples |
| geneExpr | Simulation dataset for examples |
| getVarianceComponents | Extract variance terms |
| ggColorHue | Default colors for ggplot |
| info | Simulation dataset for examples |
| plotCorrMatrix | plotCorrMatrix |
| plotCorrStructure | plotCorrStructure |
| plotPercentBars | Bar plot of variance fractions |
| plotStratify | plotStratify |
| plotStratifyBy | plotStratifyBy |
| plotVarPart | Violin plot of variance fractions |
| plotVarPart-method | Violin plot of variance fractions |
| residuals | Residuals from model fit |
| residuals-method | Residuals from model fit |
| sortCols | Sort variance partition statistics |
| sortCols-method | Sort variance partition statistics |
| varPartConfInf | Linear mixed model confidence intervals |
| varPartData | Simulation dataset for examples |