| add_custom_vcf_to_database | Adds a custom vcf file to the three existing cancer cell line panels |
| create_bed_file | create_bed_file |
| identify_vcf_file | identify_VCF_file |
| initiate_canonical_databases | initiate_canonical_databases |
| initiate_db_and_load_data | initiate_db_and_load_data |
| parse_ccle_genotype_data | parse_ccle_genotype_data |
| parse_cosmic_genotype_data | parse_cosmic_genotype_data |
| parse_vcf_file | parse_vcf_file |
| remove_custom_vcf_from_database | Removes a cancer cell line training fingerprint (vcf file) from the database. The names of all training sets can be seen by using the function 'show_contained_cls'. |
| re_calculate_cl_weights | Re-calculate sim_list_weights |
| show_contained_cls | show_contained_cls |
| show_contained_mutations | show_contained_mutations |
| show_contained_mutations_for_cl | show_contained_mutations_for_cl |
| show_which_cls_contain_mutation | show_which_cls_contain_mutation |
| split_add | split_add |
| write_data_to_db | write_data_to_db |