R Interface to UniProt Web Services

Documentation for package ‘UniProt.ws’ version 2.20.4

Help Pages

A B C D E F G H I K L M N O P R S T U V W X Z misc

-- A --

AARHUS/GHENT-2DPAGE	Descriptions of available values for 'columns' and 'keytypes'.
AGD	Descriptions of available values for 'columns' and 'keytypes'.
ALLERGOME	Descriptions of available values for 'columns' and 'keytypes'.
ARACHNOSERVER	Descriptions of available values for 'columns' and 'keytypes'.
availableUniprotSpecies	UniProt.ws objects and their related methods and functions

-- B --

BIOCYC

Descriptions of available values for 'columns' and 'keytypes'.

-- C --

CGD	Descriptions of available values for 'columns' and 'keytypes'.
CITATION	Descriptions of available values for 'columns' and 'keytypes'.
class:UniProt.ws	UniProt.ws objects and their related methods and functions
CLEANEX	Descriptions of available values for 'columns' and 'keytypes'.
CLUSTERS	Descriptions of available values for 'columns' and 'keytypes'.
cols	UniProt.ws objects and their related methods and functions
columns	UniProt.ws objects and their related methods and functions
columns-method	UniProt.ws objects and their related methods and functions
COMMENTS	Descriptions of available values for 'columns' and 'keytypes'.
CONOSERVER	Descriptions of available values for 'columns' and 'keytypes'.
CYGD	Descriptions of available values for 'columns' and 'keytypes'.

-- D --

DATABASE(PDB)	Descriptions of available values for 'columns' and 'keytypes'.
DATABASE(PFAM)	Descriptions of available values for 'columns' and 'keytypes'.
DICTYBASE	Descriptions of available values for 'columns' and 'keytypes'.
DIP	Descriptions of available values for 'columns' and 'keytypes'.
DISPROT	Descriptions of available values for 'columns' and 'keytypes'.
DMDM	Descriptions of available values for 'columns' and 'keytypes'.
DNASU	Descriptions of available values for 'columns' and 'keytypes'.
DOMAIN	Descriptions of available values for 'columns' and 'keytypes'.
DOMAINS	Descriptions of available values for 'columns' and 'keytypes'.
DRUGBANK	Descriptions of available values for 'columns' and 'keytypes'.

-- E --

EC	Descriptions of available values for 'columns' and 'keytypes'.
ECHOBASE	Descriptions of available values for 'columns' and 'keytypes'.
ECO2DBASE	Descriptions of available values for 'columns' and 'keytypes'.
ECOGENE	Descriptions of available values for 'columns' and 'keytypes'.
EGGNOG	Descriptions of available values for 'columns' and 'keytypes'.
EMBL/GENBANK/DDBJ	Descriptions of available values for 'columns' and 'keytypes'.
EMBL/GENBANK/DDBJ_CDS	Descriptions of available values for 'columns' and 'keytypes'.
ENSEMBL	Descriptions of available values for 'columns' and 'keytypes'.
ENSEMBL_GENOMES	Descriptions of available values for 'columns' and 'keytypes'.
ENSEMBL_GENOMES PROTEIN	Descriptions of available values for 'columns' and 'keytypes'.
ENSEMBL_GENOMES TRANSCRIPT	Descriptions of available values for 'columns' and 'keytypes'.
ENSEMBL_PROTEIN	Descriptions of available values for 'columns' and 'keytypes'.
ENSEMBL_TRANSCRIPT	Descriptions of available values for 'columns' and 'keytypes'.
ENTREZ_GENE	Descriptions of available values for 'columns' and 'keytypes'.
EUHCVDB	Descriptions of available values for 'columns' and 'keytypes'.
EUPATHDB	Descriptions of available values for 'columns' and 'keytypes'.
EXISTENCE	Descriptions of available values for 'columns' and 'keytypes'.

-- F --

FAMILIES	Descriptions of available values for 'columns' and 'keytypes'.
FEATURES	Descriptions of available values for 'columns' and 'keytypes'.
FLYBASE	Descriptions of available values for 'columns' and 'keytypes'.

-- G --

GENECARDS	Descriptions of available values for 'columns' and 'keytypes'.
GENEFARM	Descriptions of available values for 'columns' and 'keytypes'.
GENES	Descriptions of available values for 'columns' and 'keytypes'.
GENETREE	Descriptions of available values for 'columns' and 'keytypes'.
GENOLIST	Descriptions of available values for 'columns' and 'keytypes'.
GENOMERNAI	Descriptions of available values for 'columns' and 'keytypes'.
GERMONLINE	Descriptions of available values for 'columns' and 'keytypes'.
GI_NUMBER*	Descriptions of available values for 'columns' and 'keytypes'.
GO	Descriptions of available values for 'columns' and 'keytypes'.
GO-ID	Descriptions of available values for 'columns' and 'keytypes'.

-- H --

H-INVDB	Descriptions of available values for 'columns' and 'keytypes'.
HGNC	Descriptions of available values for 'columns' and 'keytypes'.
HOGENOM	Descriptions of available values for 'columns' and 'keytypes'.
HOVERGEN	Descriptions of available values for 'columns' and 'keytypes'.
HPA	Descriptions of available values for 'columns' and 'keytypes'.
HSSP	Descriptions of available values for 'columns' and 'keytypes'.

-- I --

ID	Descriptions of available values for 'columns' and 'keytypes'.
INTERACTOR	Descriptions of available values for 'columns' and 'keytypes'.
INTERPRO	Descriptions of available values for 'columns' and 'keytypes'.
IPI	Descriptions of available values for 'columns' and 'keytypes'.

-- K --

KEGG	Descriptions of available values for 'columns' and 'keytypes'.
keys	UniProt.ws objects and their related methods and functions
keys-method	UniProt.ws objects and their related methods and functions
keytypes	UniProt.ws objects and their related methods and functions
keytypes-method	UniProt.ws objects and their related methods and functions
KEYWORD-ID	Descriptions of available values for 'columns' and 'keytypes'.
KEYWORDS	Descriptions of available values for 'columns' and 'keytypes'.
KO	Descriptions of available values for 'columns' and 'keytypes'.

-- L --

LAST-MODIFIED	Descriptions of available values for 'columns' and 'keytypes'.
LEGIOLIST	Descriptions of available values for 'columns' and 'keytypes'.
LENGTH	Descriptions of available values for 'columns' and 'keytypes'.
LEPROMA	Descriptions of available values for 'columns' and 'keytypes'.
lookupUniprotSpeciesFromTaxId	UniProt.ws objects and their related methods and functions

-- M --

MAIZEGDB	Descriptions of available values for 'columns' and 'keytypes'.
MEROPS	Descriptions of available values for 'columns' and 'keytypes'.
MGI	Descriptions of available values for 'columns' and 'keytypes'.
MIM	Descriptions of available values for 'columns' and 'keytypes'.
MINT	Descriptions of available values for 'columns' and 'keytypes'.

-- N --

NEXTBIO	Descriptions of available values for 'columns' and 'keytypes'.
NEXTPROT	Descriptions of available values for 'columns' and 'keytypes'.

-- O --

OMA	Descriptions of available values for 'columns' and 'keytypes'.
ORGANISM	Descriptions of available values for 'columns' and 'keytypes'.
ORGANISM-ID	Descriptions of available values for 'columns' and 'keytypes'.
ORPHANET	Descriptions of available values for 'columns' and 'keytypes'.
ORTHODB	Descriptions of available values for 'columns' and 'keytypes'.

-- P --

PATHWAY	Descriptions of available values for 'columns' and 'keytypes'.
PATRIC	Descriptions of available values for 'columns' and 'keytypes'.
PDB	Descriptions of available values for 'columns' and 'keytypes'.
PEROXIBASE	Descriptions of available values for 'columns' and 'keytypes'.
PHARMGKB	Descriptions of available values for 'columns' and 'keytypes'.
PHOSSITE	Descriptions of available values for 'columns' and 'keytypes'.
PIR	Descriptions of available values for 'columns' and 'keytypes'.
POMBASE	Descriptions of available values for 'columns' and 'keytypes'.
PPTASEDB	Descriptions of available values for 'columns' and 'keytypes'.
PROTCLUSTDB	Descriptions of available values for 'columns' and 'keytypes'.
PROTEIN NAMES	Descriptions of available values for 'columns' and 'keytypes'.
PSEUDOCAP	Descriptions of available values for 'columns' and 'keytypes'.

-- R --

REACTOME	Descriptions of available values for 'columns' and 'keytypes'.
REBASE	Descriptions of available values for 'columns' and 'keytypes'.
REFSEQ_NUCLEOTIDE	Descriptions of available values for 'columns' and 'keytypes'.
REFSEQ_PROTEIN	Descriptions of available values for 'columns' and 'keytypes'.
REVIEWED	Descriptions of available values for 'columns' and 'keytypes'.
RGD	Descriptions of available values for 'columns' and 'keytypes'.

-- S --

SCORE	Descriptions of available values for 'columns' and 'keytypes'.
select	UniProt.ws objects and their related methods and functions
select-method	UniProt.ws objects and their related methods and functions
SEQUENCE	Descriptions of available values for 'columns' and 'keytypes'.
SGD	Descriptions of available values for 'columns' and 'keytypes'.
show-method	UniProt.ws objects and their related methods and functions
species	UniProt.ws objects and their related methods and functions
species-method	UniProt.ws objects and their related methods and functions

-- T --

TAIR	Descriptions of available values for 'columns' and 'keytypes'.
taxId	UniProt.ws objects and their related methods and functions
taxId-method	UniProt.ws objects and their related methods and functions
taxId<-	UniProt.ws objects and their related methods and functions
taxId<--method	UniProt.ws objects and their related methods and functions
taxname2domain	Utility functions
taxname2species	Utility functions
taxname2taxid	Utility functions
TAXONOMY-LINEAGE	Descriptions of available values for 'columns' and 'keytypes'.
TCDB	Descriptions of available values for 'columns' and 'keytypes'.
TIGR	Descriptions of available values for 'columns' and 'keytypes'.
TOOLS	Descriptions of available values for 'columns' and 'keytypes'.
TUBERCULIST	Descriptions of available values for 'columns' and 'keytypes'.

-- U --

UCSC	Descriptions of available values for 'columns' and 'keytypes'.
UNIGENE	Descriptions of available values for 'columns' and 'keytypes'.
UNIPARC	Descriptions of available values for 'columns' and 'keytypes'.
UNIPATHWAY	Descriptions of available values for 'columns' and 'keytypes'.
UniProt.ws	UniProt.ws objects and their related methods and functions
UniProt.ws-class	UniProt.ws objects and their related methods and functions
UNIPROTKB	Descriptions of available values for 'columns' and 'keytypes'.
UNIREF100	Descriptions of available values for 'columns' and 'keytypes'.
UNIREF50	Descriptions of available values for 'columns' and 'keytypes'.
UNIREF90	Descriptions of available values for 'columns' and 'keytypes'.
updatespecfile	Utility functions
utilities	Utility functions

-- V --

VECTORBASE	Descriptions of available values for 'columns' and 'keytypes'.
VERSION	Descriptions of available values for 'columns' and 'keytypes'.

-- W --

WORLD-2DPAGE	Descriptions of available values for 'columns' and 'keytypes'.
WORMBASE	Descriptions of available values for 'columns' and 'keytypes'.
WORMBASE_PROTEIN	Descriptions of available values for 'columns' and 'keytypes'.
WORMBASE_TRANSCRIPT	Descriptions of available values for 'columns' and 'keytypes'.

-- X --

XENBASE

Descriptions of available values for 'columns' and 'keytypes'.

-- Z --

ZFIN	Descriptions of available values for 'columns' and 'keytypes'.

-- misc --

3D	Descriptions of available values for 'columns' and 'keytypes'.