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Documentation for package ‘TSSi’ version 1.28.0

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TSSi-package Transcription Start Site Identification
annotation Get methods
annotation-method Get methods
annotation-TSSi Get methods
asRangedData Convert to 'RangedData'
asRangedData-methods Convert to 'RangedData'
asRangedData-TSSi Convert to 'RangedData'
assessGradPoisson Normalize methods
assessPoisson Normalize methods
counts Get methods
counts-method Get methods
counts-TSSi Get methods
delta Get methods
delta-method Get methods
delta-TSSi Get methods
end-method Get methods
end-TSSi Get methods
expect Get methods
expect-method Get methods
expect-TSSi Get methods
fit Get methods
fit-method Get methods
fit-TSSi Get methods
get-methods Get methods
get-TSSi Get methods
idenfify-methods Identify methods
identifyStartSites Identify methods
identifyStartSites-method Identify methods
identifyStartSites-TSSi Identify methods
names-method Get methods
names-TSSi Get methods
normalizeCounts Normalize methods
normalizeCounts-method Normalize methods
normalizeCounts-methods Normalize methods
normalizeCounts-TSSi Normalize methods
parameters Get methods
parameters-method Get methods
parameters-TSSi Get methods
physcoCounts CAP capture data
physcoCounts-data CAP capture data
physcoCounts-TSSi CAP capture data
plot Plot methods
plot-method Plot methods
plot-methods Plot methods
plot-TSSi Plot methods
ratio Get methods
ratio-method Get methods
ratio-TSSi Get methods
reads Get methods
reads-method Get methods
reads-TSSi Get methods
readsAsRangedData Convert to 'RangedData'
readsAsRangedData-method Convert to 'RangedData'
readsAsRangedData-TSSi Convert to 'RangedData'
segmentizeCounts Segmentize methods
segmentizeCounts-method Segmentize methods
segmentizeCounts-methods Segmentize methods
segmentizeCounts-TSSi Segmentize methods
segments Get methods
segments-method Get methods
segments-TSSi Get methods
segmentsAsRangedData Convert to 'RangedData'
segmentsAsRangedData-method Convert to 'RangedData'
segmentsAsRangedData-TSSi Convert to 'RangedData'
show-method Class 'TssData'
show-method Class 'TssNorm'
show-method Class 'TssResult'
show-TSSi Class 'TssData'
start-method Get methods
start-TSSi Get methods
subtract-functions Subtract functions
subtractExpectation Subtract functions
subtractExpectation-TSSi Subtract functions
tss Get methods
tss-method Get methods
tss-TSSi Get methods
tssAsRangedData Convert to 'RangedData'
tssAsRangedData-method Convert to 'RangedData'
tssAsRangedData-TSSi Convert to 'RangedData'
TssData Class 'TssData'
TssData-class Class 'TssData'
TssData-TSSi Class 'TssData'
TSSi Transcription Start Site Identification
TssNorm Class 'TssNorm'
TssNorm-class Class 'TssNorm'
TssNorm-TSSi Class 'TssNorm'
TssResult Class 'TssResult'
TssResult-class Class 'TssResult'
TssResult-TSSi Class 'TssResult'
[-method Get methods