| dat | Simulated gene expression data. |
| dat2 | Simulated gene expression data. |
| eSet1 | A simulated expression set. |
| eSet2 | A simulated expression set. |
| grp | A group indicator. |
| plot.tsp | Graphical display of tsp objects |
| predict | Prediction based on a tsp object |
| predict.tsp | Prediction based on a tsp object |
| summary | Summary of a tsp object |
| summary.tsp | Summary of a tsp object |
| ts.pair | Calculation of top scoring pairs. |
| tspcalc | Estimate top scoring pairs from a gene expression matrix |
| tspdata | Simulated gene expression data in both matrix and expression set format. |
| tspplot | Graphical display of tsp objects |
| tspsig | Significance calculation for top scoring pairs |