GWAS trait-associated SNP enrichment analyses in genomic intervals

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Documentation for package ‘traseR’ version 1.6.0

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traseR-package GWAS trait-associated SNP enrichment analyses in genomic intervals
CEU Sampled SNPs from all SNPs of CEU population in 1000 genome project
plotContext Visualize of trait-associated SNPs
plotGene Visualize of trait-associated SNPs
plotInterval Visualize of trait-associated SNPs
plotPvalue Visualize of trait-associated SNPs
plotSNP Visualize of trait-associated SNPs
print.traseR Print the outcome of taSNP enrichment analyses
queryGene Retrieve trait-associated SNPs based
queryKeyword Retrieve trait-associated SNPs based
querySNP Retrieve trait-associated SNPs based
taSNP trait-associated SNPs in dbGaP and NHGRI downloaded from Association Results Browser
taSNPLD linkage disequilibrium (>0.8) within 100kb SNPs of all trait-associated SNPs from dbGaP and NHGRI
Tcell Peak regions of H3K4me1 in Peripheral blood T cell
traseR TRait-Associated SNP EnRichment analyses