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| StarBioTrek-package | Download data |
| average | For TCGA data get human pathway data and creates a matrix with the average of genes for each pathway. |
| ds_score_crtlk | For TCGA data get human pathway data and creates a measure of discriminating score among pathways |
| euc_dist_crtlk | For TCGA data get human pathway data and creates a measure of cross-talk among pathways |
| getKEGGdata | Get human KEGG pathway data. |
| getNETdata | Get network data. |
| GE_matrix | Get human KEGG pathway data and a gene expression matrix in order to obtain a matrix with the gene expression for only pathways given in input . |
| IPPI | Multilayer analysis Cava et al. BMC Genomics 2017 |
| list_path_net | Get human KEGG pathway data and output of path_net in order to define the common genes. |
| matrix_plot | Get human KEGG pathway data and a gene expression matrix in order to obtain a matrix with the mean gene expression for only pathways given in input . |
| path_net | Get human KEGG pathway data and network data in order to define the common gene. |
| plotting_cross_talk | Get human KEGG pathway data and a gene expression matrix we obtain a matrix with the gene expression for only pathways given in input . |
| process_matrix | Process matrix TCGA data after the selection of pairwise pathway |
| proc_path | Get human KEGG pathway data. |
| SelectedSample | Select the class of TCGA data |
| select_class | Select the class of TCGA data |
| StarBioTrek | Download data |
| st_dv | For TCGA data get human pathway data and creates a measure of standard deviations among pathways |
| svm_classification | SVM classification for each feature |