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| as.data.frame.SpliceExprSet | SpliceExprSet object to data.frame converter |
| as.data.frame.SpliceSites | SpliceExprSet object to data.frame converter |
| barplot.SpliceSites | barplot for SpliceSites |
| buildSpliceSites | Functions to query PALSdb |
| eset | Example data for splicegear |
| exprs-method | Class "SpliceExprSet" |
| exprs<--method | Class "SpliceExprSet" |
| getFinalRatio | functions to perform SPLICE |
| getPALSdbURL | Functions to query PALSdb |
| getRelSignStrength | functions to perform SPLICE |
| grid.expand.gp | convenience functions for grid |
| grid.make.numeric2npc | convenience functions for grid |
| grid.plot | Class "SpliceExprSet" |
| grid.plot-method | Class "Probes" |
| grid.plot-method | Class "SpliceExprSet" |
| grid.plot.Probes | Plot splicegear objects |
| grid.plot.SpliceExprSet | Plot splicegear objects |
| grid.plot.SpliceSites | Plot splicegear objects |
| initialize-method | Class "Probes" |
| initialize-method | Class "SpliceSites" |
| isProbeOnSpliceSite | Check the presence of probes on certain exons |
| isSpliceSiteOnProbe | Check the presence of probes on certain exons |
| matchprobes2Probes | create Probes object from matchprobes results |
| plot-method | Class "Probes" |
| plot-method | Class "SpliceExprSet" |
| plot-method | Class "SpliceSites" |
| plot-method | Class "SpliceSitesGenomic" |
| plot.Probes | plot a SpliceSites object |
| plot.SpliceExprSet | plot a SpliceExprSet |
| plot.SpliceSites | plot a SpliceSites object |
| plot.SpliceSitesGenomic | Function to plot SpliceSitesGenomic objects |
| probes | Example data for splicegear |
| Probes-class | Class "Probes" |
| queryPALSdb | Functions to query PALSdb |
| show-method | Class "Probes" |
| show-method | Class "SpliceExprSet" |
| show-method | Class "SpliceSites" |
| sort.SpliceExprSet | A function to sort a SpliceExprSet |
| SpliceExprSet-class | Class "SpliceExprSet" |
| spliceset | Example data for splicegear |
| spliceSites | Class "SpliceExprSet" |
| SpliceSites-class | Class "SpliceSites" |
| spliceSites-method | Class "SpliceExprSet" |
| SpliceSitesGenomic-class | Class "SpliceSitesGenomic" |
| split.SpliceSites | split an instance of SpliceSites |
| spsites | Example data for splicegear |