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| SpidermiR-package | Download data |
| Case_Study1_loading_1_network | Loading 1 network of shared protein domanin |
| Case_Study1_loading_2_network | Loading 2 network of shared protein domanin |
| Case_Study1_loading_3_network | Loading 3 network of shared protein domanin |
| Case_Study1_loading_4_network | Loading 4 network of shared protein domanin |
| Case_Study2_loading_1_network | Loading 1 network of Protein Interactions (PI) |
| Case_Study2_loading_2_network | Loading 2 network of Protein Interactions (PI) with miRNAs |
| Case_Study2_loading_3_network | Loading 3 network of Protein Interactions (PI) with miRNAs |
| SpidermiR | Download data |
| SpidermiRanalyze_Community_detection | Find community detection |
| SpidermiRanalyze_Community_detection_bi | Community detection from biomarkers of interest |
| SpidermiRanalyze_Community_detection_net | Find the network of community detection and direct biormarker |
| SpidermiRanalyze_degree_centrality | Ranking degree centrality genes |
| SpidermiRanalyze_direct_net | Searching by biomarkers of interest with direct interaction |
| SpidermiRanalyze_direct_subnetwork | Searching by biomarkers of interest with direct interaction by ONLY the nodes in BI |
| SpidermiRanalyze_mirnanet_pharm | Integration of pharmacomiR in the network |
| SpidermiRanalyze_mirna_gene_complnet | Integration of microRNA target gene networks. |
| SpidermiRanalyze_mirna_network | Integration of microRNA target networks. |
| SpidermiRanalyze_subnetwork_neigh | Searching by biomarkers of interest and all the edges among this bunch of nodes |
| SpidermiRdownload_miRNAextra_cir | Download miRNA validated database |
| SpidermiRdownload_miRNAprediction | Download miRNA predicted database |
| SpidermiRdownload_miRNAvalidate | Download miRNA validated database |
| SpidermiRdownload_net | Download the network from GeneMania. |
| SpidermiRdownload_pharmacomir | Download both miRNA target and the gene-drug interaction from PharmacomiR database |
| SpidermiRprepare_NET | Prepare matrix of gene network from Genamania with Ensembl Gene ID, and gene symbols |
| SpidermiRquery_disease | Visualize disease categories |
| SpidermiRquery_networks_type | Network categories |
| SpidermiRquery_species | Searching by network species |
| SpidermiRquery_spec_networks | Searching by network categories |
| SpidermiRvisualize_3Dbarplot | plots the 3D barplot |
| SpidermiRvisualize_adj_matrix | plots the adjacency matrix of the network |
| SpidermiRvisualize_BI | Visualize results obtained by SpidermiR analysis starting form a set of biomarker of interest |
| SpidermiRvisualize_degree_dist | plots the degree distribution of the network |
| SpidermiRvisualize_direction | Visualize results obtained by SpidermiR analysis with the direction of the interaction (pharmaco-gene and miRNA-gene) |
| SpidermiRvisualize_mirnanet | Visualize results obtained by SpidermiR analysis |
| SpidermiRvisualize_plot_target | Visualize results obtained by SpidermiRanalyze_mirna_network |