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| arrangeFigs | Arranging two trellis objects on a grid. |
| arrangeSideBySide | Helper function to arrange two trellis objects side by side on a grid. |
| centromere | Coordinates of centromere |
| dataFrame | Generic function for coercing gSet objects to data.frame |
| dataFrame-method | Construct a data.frame from genomic data for plotting |
| dataFrame-methods | Construct a data.frame from genomic data for plotting |
| getCytoband | getCytoband |
| latticeFigs | Generate trellis objects of log R ratios and B allele frequencies |
| plotCytoband2 | Plots idiogram for one chromosome |
| plotIdiogram | Plots idiogram for one chromosome |
| xypanel | A panel function for plotting copy number versus physical position |
| xypanelBaf | Panel function for plotting copy number and B allele frequencies for a genomic interval. |
| xyplot2 | Plot copy number and physical position for a set of genomic intervals. |
| xyplot2-method | Plot copy number and physical position for a set of genomic intervals. |
| xyplotLrrBaf | xyplot lattice function for RangedData and oligoSnpSet objects |