| SIMD-package | A method to infer the methylation expression level for each CpG sites. |
| EMalgorithm | EM algorithm to infer CpG sites. |
| emalgth | Calculate the probability on condition that the sums equal to 1. |
| emalgth1 | Calculate the probability on condition that the sums more than 1. |
| EMtest | Inferring the methylation expression level of single sites. |
| probBinom | Compute P-values for Medip-seq and MRE-seq data. |