Empirical Bayesian approach to mutational signature discovery

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Documentation for package ‘signeR’ version 1.16.0

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signeR-package Empirical Bayesian approach to mutational signature discovery
Average_exp SignExp class methods
Average_exp-method SignExp class methods
Average_sign SignExp class methods
Average_sign-method SignExp class methods
BICboxplot signeR plot functions
Classify Classify unknown samples
Classify-method Classify unknown samples
DiffExp Differential Exposure Analysis
DiffExp-method Differential Exposure Analysis
ExposureBarplot signeR plot functions
ExposureBarplot-method signeR plot functions
ExposureBoxplot signeR plot functions
ExposureBoxplot-method signeR plot functions
ExposureHeat signeR plot functions
ExposureHeat-method signeR plot functions
genCountMatrixFromVcf count matrix and opportinity matrix generators
genOpportunityFromGenome count matrix and opportinity matrix generators
Median_exp SignExp class methods
Median_exp-method SignExp class methods
Median_sign SignExp class methods
Median_sign-method SignExp class methods
Normalize SignExp class methods
Normalize-method SignExp class methods
Paths signeR plot functions
Paths-method signeR plot functions
Reorder_mutations SignExp class methods
Reorder_mutations-method SignExp class methods
Reorder_samples SignExp class methods
Reorder_samples-method SignExp class methods
Reorder_signatures SignExp class methods
Reorder_signatures-method SignExp class methods
setMutations SignExp class methods
setMutations-method SignExp class methods
setSamples SignExp class methods
setSamples-method SignExp class methods
signeR signeR
SignExp SignExp class
SignExp-class SignExp class
SignHeat signeR plot functions
SignHeat-method signeR plot functions
SignPlot signeR plot functions
SignPlot-method signeR plot functions