Datasets for signatureSearch package

---

Documentation for package ‘signatureSearchData’ version 1.8.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

cmap	CMap2 LFC Signature Database
cmap_expr	CMap Intensity Signature Database
cmap_rank	Cmap Rank Signature Database
combineNormRes	Combine Normalized Data from Different Chip Types
combineResults	Combine Batch-processed Normalization Results
dtlink_db_clue_sti	Drug-Target Annotation Resources
ES_NULL	Null Distribution of WTCS from 'gess_lincs' Method
getCmapCEL	Download CMap2 CEL Files
goAnno	GO Term to Gene SYMBOLs Mapping Annotation
goAnno_drug	GO Term ID to Drug Name Mapping Annotation
GO_DATA	GO Annotation Environment
GO_DATA_drug	GO to Drug Annotation Environment
inst_filter	Filter LINCS Level 3 by Condition
lincs	LINCS Z-score Signature Database
lincs_expr	LINCS Intensity Signature Database
meanExpr	Calculate Mean Value for Replicated Samples
normalizeCel	Normalize CEL Files
probe2gene	Transform Probe Set to Gene Level Data
runLimma	DEG Analysis with Limma
sampleList	Generate List of Treatment vs. Control Samples
signatureSearchData	signatureSearchData: Reference Data for Gene Expression Signature Searching
sig_filter	Filter LINCS Level 5 by Condition
taurefList	Lookup Table for Computing Tau Scores