scMerge: Merging multiple batches of scRNA-seq data

Documentation for package ‘scMerge’ version 1.0.0

eigenMatMult	Fast matrix multiplication using RcppEigen
eigenResidop	fast matrix residual operator using RcppEigen
example_sce	Subsetted mouse ESC 'SingleCellExperiment' object
fastRUVIII	A fast version of the ruv::RUVIII algorithm
ruvSimulate	Simulate a simple matrix or SingleCellExperiment to test internals of scMerge
sce_cbind	Combind several 'SingleCellExperiment' objects from different batches/experiments
scMerge	Perform the scMerge algorithm
scReplicate	Create replicate matrix for scMerge algorithm
scRUVg	RUVg function for single cell (under development)
scRUVIII	scRUVIII: RUVIII algorithm optimised for single cell data
scSEGIndex	scSEGIndex
segList	Stably expressed gene list in official gene symbols for both human and mouse
segList_ensemblGeneID	Stably expressed gene list in EnsemblGeneID for both human and mouse