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| BatchAdjust | Helper function for applying the ComBat batch-adjusting methodology to an ExpressionSet object |
| BatchAdjustFromFile | Helper function for applying the ComBat batch-adjusting methodology to an ExpressionSet object |
| InstallBrainArrayPackage | Helper function for installing BrainArray packages |
| ParseMetaFromGtfFile | Helper function to parse length and GC content information from a GTF file. |
| SCAN | Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays |
| SCANfast | Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays |
| SCAN_TwoColor | Single-Channel Array Normalization (SCAN) for Agilent two-color expression microarrays |
| UPC | Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays |
| UPCfast | Single-Channel Array Normalization (SCAN) and Universal exPression Codes (UPC) for Affymetrix microarrays |
| UPC_Generic | Generic function to apply Universal exPression Codes (UPC) transformation |
| UPC_Generic_ExpressionSet | Generic function to apply Universal exPression Codes (UPC) transformation to ExpressionSet objects |
| UPC_RNASeq | Universal exPression Codes (UPC) for RNA-Seq data |
| UPC_RNASeq_Single | Apply Universal exPression Codes (UPC) transformation to a single RNA-Seq sample |
| UPC_TwoColor | Universal exPression Codes (UPC) for two-channel microarrays |