| SAIGEgds-package | Scalable Implementation of Generalized mixed models in Phenome-Wide Association Studies using GDS files |
| glmmHeritability | Heritability estimation |
| pACAT | Cauchy Combination Test |
| pACAT2 | Cauchy Combination Test |
| SAIGEgds | Scalable Implementation of Generalized mixed models in Phenome-Wide Association Studies using GDS files |
| seqAssocGLMM_ACAT_O | ACAT-V tests |
| seqAssocGLMM_ACAT_V | ACAT-V tests |
| seqAssocGLMM_Burden | Burden tests |
| seqAssocGLMM_SKAT | SKAT tests |
| seqAssocGLMM_SPA | P-value calculation |
| seqFitDenseGRM | Sparse Genetic relationship matrix |
| seqFitLDpruning | LD pruning |
| seqFitNullGLMM_SPA | Fit the null model with GRM |
| seqFitSparseGRM | Sparse Genetic relationship matrix |
| seqSAIGE_LoadPval | Load the association results |