Remove Unwanted Variation from RNA-Seq Data

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Documentation for package ‘RUVSeq’ version 1.10.0

Help Pages

RUVSeq-package Remove Unwanted Variation from RNA-Seq Data
makeGroups Make a matrix suitable for use with RUVSeq methods such as 'RUVs'.
residuals.DGEGLM Deviance and Pearson Residuals for the Negative Binomial Model of 'edgeR'
RUVg Remove Unwanted Variation Using Control Genes
RUVg-method Remove Unwanted Variation Using Control Genes
RUVg-methods Remove Unwanted Variation Using Control Genes
RUVr Remove Unwanted Variation Using Residuals
RUVr-method Remove Unwanted Variation Using Residuals
RUVr-methods Remove Unwanted Variation Using Residuals
RUVs Remove Unwanted Variation Using Replicate/Negative Control Samples
RUVs-method Remove Unwanted Variation Using Replicate/Negative Control Samples
RUVs-methods Remove Unwanted Variation Using Replicate/Negative Control Samples
RUVSeq Remove Unwanted Variation from RNA-Seq Data