| compareSV | Compare the simulation with a set of SVs |
| compareSV-method | Compare the simulation with a set of SVs |
| estimateSVSizes | Draw random structural variation sizes from a beta distribution |
| estimateSVSizes-method | Draw random structural variation sizes from a beta distribution |
| segDups | Segmental duplications |
| simulateSV | Structural Variant Simulation |
| simulateSV,ANY | Structural Variant Simulation |
| simulateSV-method | Structural Variant Simulation |
| weightsMechanisms | Weights for SV formation mechanisms |
| weightsRepeats | Weights for repeat region bias |