![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
| rnits-package | rnits. |
| $ | replace slot of Rnits |
| $<--method | replace slot of Rnits |
| build.Rnits | Input the RGlist raw data, build a Rnits object and perform filtering and normalization |
| calculateGCV | Calculate the optimal B-spline model using generalized cross-validation |
| calculateGCV-method | Calculate the optimal B-spline model using generalized cross-validation |
| fit | Fit model on time series data |
| fit-method | Fit model on time series data |
| getCID | Cluster IDs of probes/genes from fitted 'Rnits' |
| getCID-method | Cluster IDs of probes/genes from fitted 'Rnits' |
| getFitModel | Extract fit data from 'Rnits' object |
| getFitModel-method | Extract fit data from 'Rnits' object |
| getLR | Get log-ratios |
| getLR-method | Get log-ratios |
| getNormTwoChannel | Get Normalized channel data for two channel arrays |
| getNormTwoChannel-method | Get Normalized channel data for two channel arrays |
| getPval | Get p-values |
| getPval-method | Get p-values |
| getStat | Retrieve ratio statistics |
| getStat-method | Retrieve ratio statistics |
| plotResults | Plot profiles of top genes/probes |
| plotResults-method | Plot profiles of top genes/probes |
| rnits | rnits. |
| Rnits-class | rnits class |
| Rnits.getLR | Get log-ratios |
| summarizeProbes | Summarize probe level data to gene level data |
| summarizeProbes-method | Summarize probe level data to gene level data |
| summary-method | Summary of fit |
| timeAlign | Curve registration of time series curves |
| timeAlign-method | Curve registration of time series curves |
| topData | Data of top genes/probes |
| topData-method | Data of top genes/probes |
| yeastchemostat | Yeast chemostat data from Ronen and Botstein (Proc Natl Acad Sci U S A. 2006 Jan 10;103(2):389-94. Epub 2005 Dec 28.) |