| Risa-package | Risa package overview |
| AssayTab-class | Class '"AssayTab"', a class for maintaing the information of AssayTab |
| getAnnotatedDataFrameAssay | Retrieves an AnnotatedDataFrameAssay. |
| getAssayRawDataFilenames | ~~ Methods for Function 'getAssayRawDataFilenames' in Package 'Risa' ~~ |
| getAssayRawDataFilenames-method | ~~ Methods for Function 'getAssayRawDataFilenames' in Package 'Risa' ~~ |
| getAssayRawDataFilenames-methods | ~~ Methods for Function 'getAssayRawDataFilenames' in Package 'Risa' ~~ |
| getExpressionSet | Retrieves an ExpressionSet for a DNA microarray assay. |
| getMIAMEMetadata | Retrieves the MIAME information about a microarray experiment |
| getMicroarrayAssayFilenames | Listing filenames of microarray-based asssay from an ISAtab dataset. |
| getMSAssayFilenames | Retrieves a vector with the assay filenames corresponding to mass spectrometry. |
| getRawDataFilenames | ~~ Methods for Function 'getRawDataFilenames' in Package 'Risa' ~~ |
| getRawDataFilenames-method | ~~ Methods for Function 'getRawDataFilenames' in Package 'Risa' ~~ |
| getRawDataFilenames-methods | ~~ Methods for Function 'getRawDataFilenames' in Package 'Risa' ~~ |
| getStudyFilename | Retrieves the study filename to which an assay.filename corresponds. |
| ISATab-class | Class '"ISATab"', a class for maintaing ISATab information |
| isMicroarrayAssay | Determines if an assay is microarray-based or not. |
| isMSAssay | Indicates if an assay filename corresponds to a mass spectrometry assay. |
| MicroarrayAssayTab-class | Class '"AssayTab"', a class for maintaing the information of AssayTab |
| MSAssayTab-class | Class '"AssayTab"', a class for maintaing the information of AssayTab |
| NMRAssayTab | Class '"AssayTab"', a class for maintaing the information of AssayTab |
| processAssayXcmsSet | Build an xcmsSet object given a mass spectrometry assay and considering all factors defined |
| processAssayXcmsSet.1factor | Build an xcmsSet object given a mass spectrometry assay and considering the first factor defined |
| readISAtab | Reads an ISAtab dataset into an R object. |
| Risa | Risa package overview |
| SeqAssayTab | Class '"AssayTab"', a class for maintaing the information of AssayTab |
| suggestBiocPackage | Suggest Bioconductor pacakges |
| updateAssayMetadata | Update metadata into the assay file |
| write.assay.file | Write an Assay File from the ISA-Tab dataset |
| write.investigation.file | Writes the Investigation File of an ISA-Tab dataset |
| write.ISAtab | Write an ISA-Tab dataset |
| write.study.file | Write a Study File of an ISA-Tab dataset |
| [-method | Class '"AssayTab"', a class for maintaing the information of AssayTab |
| [-method | Class '"ISATab"', a class for maintaing ISATab information |
| [<--method | Class '"AssayTab"', a class for maintaing the information of AssayTab |
| [<--method | Class '"ISATab"', a class for maintaing ISATab information |