L1-regularization based methods for detection of differential splicing

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Documentation for package ‘regsplice’ version 1.6.0

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assays-method RegspliceData objects.
colData-method RegspliceData objects.
countsData RegspliceData objects.
countsData-method RegspliceData objects.
createDesignMatrix Create design matrix.
df_tests RegspliceResults objects.
df_tests-method RegspliceResults objects.
filterLowCounts Filter low-count exons.
filterZeros Filter zero-count exons.
fitFullMultiple Fit models.
fitNullMultiple Fit models.
fitRegMultiple Fit models.
gene_IDs RegspliceResults objects.
gene_IDs-method RegspliceResults objects.
initializeResults Initialize RegspliceResults object.
LRTests Calculate likelihood ratio tests.
LR_stats RegspliceResults objects.
LR_stats-method RegspliceResults objects.
p_adj RegspliceResults objects.
p_adj-method RegspliceResults objects.
p_vals RegspliceResults objects.
p_vals-method RegspliceResults objects.
regsplice Wrapper function to run regsplice.
RegspliceData RegspliceData objects.
RegspliceData-class RegspliceData objects.
RegspliceResults RegspliceResults objects.
RegspliceResults-class RegspliceResults objects.
rowData-method RegspliceData objects.
runNormalization Calculate normalization factors.
runVoom Calculate 'voom' transformation and weights.
summaryTable Summary table.
weightsData RegspliceData objects.
weightsData-method RegspliceData objects.
[-method RegspliceData objects.