| QUALIFIER-package | QUALIFIER: A package that provides automated flow data quality assessment based on gated cell populations |
| clearCheck | Perform the quality assessment for the qaTask object |
| db | The example QA data included in the package |
| description,qaTask | a class for storing important information of flow cytometry data quality assessment task |
| formula,qaTask | a class for storing important information of flow cytometry data quality assessment task |
| getData,qaTask | a class for storing important information of flow cytometry data quality assessment task |
| getName,qaTask | a class for storing important information of flow cytometry data quality assessment task |
| getPop,qaTask | a class for storing important information of flow cytometry data quality assessment task |
| getQAStats | Get statistics from gated data for QA check. |
| getQAStats-method | Get statistics from gated data for QA check. |
| getQAStats-methods | Get statistics from gated data for QA check. |
| highlight | a class for storing important information of flow cytometry data quality assessment task |
| highlight-method | a class for storing important information of flow cytometry data quality assessment task |
| highlight<- | a class for storing important information of flow cytometry data quality assessment task |
| highlight<--method | a class for storing important information of flow cytometry data quality assessment task |
| htmlReport | a class for storing important information of flow cytometry data quality assessment task |
| htmlReport-method | a class for storing important information of flow cytometry data quality assessment task |
| htmlReport<- | a class for storing important information of flow cytometry data quality assessment task |
| htmlReport<--method | a class for storing important information of flow cytometry data quality assessment task |
| initDB | Initializes the data environment |
| ITNQASTUDY | The example QA data included in the package |
| load_db | save/load the data environment to/from disk |
| outlier.cutoff | outliers detection functions |
| outlier.norm | outliers detection functions |
| outlier.t | outliers detection functions |
| outlierFunctions | outliers detection functions |
| plot | plot the statistics for a particular cell population of a group of samples |
| plot-method | plot the statistics for a particular cell population of a group of samples |
| plot-methods | plot the statistics for a particular cell population of a group of samples |
| plotType,qaTask | a class for storing important information of flow cytometry data quality assessment task |
| proportion.outliers.mle | outliers detection functions |
| proportion.outliers.robust | outliers detection functions |
| qaCheck | Perform the quality assessment for the qaTask object |
| qaCheck-method | Perform the quality assessment for the qaTask object |
| qaCheck-methods | Perform the quality assessment for the qaTask object |
| qaCheckList | The example QA data included in the package |
| qaID,qaTask | a class for storing important information of flow cytometry data quality assessment task |
| qaLevel,qaTask | a class for storing important information of flow cytometry data quality assessment task |
| qaPreprocess | Preprocessing for QA check |
| qaReport | create quality assessment report |
| qaReport-method | create quality assessment report |
| qaReport-methods | create quality assessment report |
| qaTask | a class for storing important information of flow cytometry data quality assessment task |
| qaTask-class | a class for storing important information of flow cytometry data quality assessment task |
| qoutlier | outliers detection functions |
| qpar | a class for storing important information of flow cytometry data quality assessment task |
| qpar-method | a class for storing important information of flow cytometry data quality assessment task |
| qpar<- | a class for storing important information of flow cytometry data quality assessment task |
| qpar<--method | a class for storing important information of flow cytometry data quality assessment task |
| QUALIFIER | QUALIFIER: A package that provides automated flow data quality assessment based on gated cell populations |
| queryStats | Perform the quality assessment for the qaTask object |
| queryStats-method | Perform the quality assessment for the qaTask object |
| read.qaTask | Loading 'qaTask's from a csv file |
| rFunc | a class for storing important information of flow cytometry data quality assessment task |
| rFunc-method | a class for storing important information of flow cytometry data quality assessment task |
| rFunc<- | a class for storing important information of flow cytometry data quality assessment task |
| rFunc<--method | a class for storing important information of flow cytometry data quality assessment task |
| rlm | outliers detection functions |
| saveToDB | Save the gating set and annotation data into the data environment. |
| save_db | save/load the data environment to/from disk |
| scatterPar | a class for storing important information of flow cytometry data quality assessment task |
| scatterPar-method | a class for storing important information of flow cytometry data quality assessment task |
| scatterPar<- | a class for storing important information of flow cytometry data quality assessment task |
| scatterPar<--method | a class for storing important information of flow cytometry data quality assessment task |
| show,qaTask | a class for storing important information of flow cytometry data quality assessment task |
| tubesevents | The example QA data included in the package |