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| $.cytoFrame | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| analysePlate | Apply a statistic to the data from each well in a plate |
| appendGates | 'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| appendGates, gateSet_method | 'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| appendGates-method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| appendGates-method | 'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| applyGate | 'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| applyGate-method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| applyGate-method | 'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| applyGate-method | 'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| as.all | Coercion without introduction of NAs |
| as.gateSet | 'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| as.gateSet-method | 'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| barploterrbar | Barplot with error bars. |
| cframe | A sample cytoFrame object - German Cancer Research Center Heidelberg - |
| colnames-method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| colnames-method | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| colnames<--method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| colnames<--method | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| combineFrames | Combine the cytoFrames within a cytoSet according to some grouping factor |
| combineGates | 'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| csApply | Apply a function over the intensities in a cytoSet |
| cset | A sample cytoSet object - German Cancer Research Center Heidelberg - |
| cytoFrame | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| cytoFrame-class | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| cytoSet | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| cytoSet-class | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| description-method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| description<--method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| devDims | Device Dimensions for plate plots |
| devRes | Resolution of current plotting device |
| drawGate | 'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| drawGate-method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| exprs-method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| exprs<--method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| fitNorm2 | Fit bivariate normal distribution. |
| gate | 'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| gate-class | 'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| gate-method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| gate<- | 'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| gate<--method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| gateSet | 'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| gateSet-class | 'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| getAlphaNumeric | Convert from plate coordinates to alphanumeric notation. |
| getPradaPar | Set and query global parameters for functions in the prada package |
| hist-method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| hist-method | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| killProgress | A simple tcltk progress window |
| length-method | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| length-method | 'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| lines-method | 'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| names-method | 'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| names-method | 'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| names<--method | 'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| names<--method | 'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| ncol-method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| nrow-method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| pData-method | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| phenoData-method | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| phenoData<--method | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| plot-method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| plot-method | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| plotNorm2 | Plot fitted bivariate normal distribution. |
| plotPlate | Plot a well statistic for microtiter plates. |
| progress | A simple tcltk progress window |
| read.fcs | Read an FCS file |
| readCytoSet | Create a cytoSet object from one or more FCS 3.0 files |
| readFCS | Read an FCS file |
| readFCSdata | Auxiliary functions for readFCS |
| readFCSgetPar | Auxiliary functions for readFCS |
| readFCSheader | Auxiliary functions for readFCS |
| readFCStext | Auxiliary functions for readFCS |
| removeCensored | Remove rows that contain censored data |
| removeCensored-method | Remove rows that contain censored data |
| setPradaPars | Set and query global parameters for functions in the prada package |
| show-method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| show-method | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| show-method | 'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| show-method | 'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| split-method | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| threePanelPlot | Visualize cytometry data |
| thresholds | Discretize a two-dimensional data space into quadrants by applying thresholds |
| touchFCS | Check for FCS files |
| updateProgress | A simple tcltk progress window |
| vpLocation | Absolute location of current viewport |
| [-method | 'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| [-method | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| [-method | 'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| [[-method | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| [[-method | 'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| [[<--method | 'cytoSet': a class for storing raw data from a quantitative cell-based assay |