| plw-package | plw |
| AffySpikeU95Subset | Spike-in data |
| estimateMVbeta | Zero mean multivariate t-dist. with covariate dependent scale. |
| estimateSigma | Fit zero mean multivariate t-distribution, known df |
| estimateSigmaMV | Fit zero mean multivariate t-distribution |
| estimateSigmaMVbeta | Zero mean multivariate t-dist. with covariate dependent scale. |
| getKnots | Spline-knots for plw and lmw |
| HGU95subset1016 | Spike-in data |
| HowToPLW | View HowToPLW |
| lmw | Locally Moderated Weighted-t. |
| logitTStat | logit-t and t-test by row |
| logitTTransform | logit-t and t-test by row |
| madByIndex | Computes statistics by index or by row |
| meanByIndex | Computes statistics by index or by row |
| meanSdByRow | Computes statistics by index or by row |
| medianByIndex | Computes statistics by index or by row |
| orderStatByIndex | Computes statistics by index or by row |
| plotSummaryLog2FC | Return or plots analysis result for top ranking or selected probe sets |
| plotSummaryT | Return or plots analysis result for top ranking or selected probe sets |
| plw | Probe level Locally moderated Weighted median-t. |
| scaleParameterPlot | Scale parameter plotted against mean intensity |
| sdByIndex | Computes statistics by index or by row |
| spikedProbesU95 | Spike-in data |
| studenttTTest | logit-t and t-test by row |
| topRankSummary | Return or plots analysis result for top ranking or selected probe sets |
| varHistPlot | Variance histogram and density |