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| aggregateExprs | Aggregate expression data |
| convertSmc | Convert Entrez ID based "smc" object |
| editSmc | Edit "smc" objects |
| go2smc | Gene Ontology 2 "smc" |
| GOLUBmcs | Molecular Concepts prepared at VAI from data created by Golub et al. |
| kegg2smc | KEGG pathway to "smc" |
| nbEset | Reduced Neuroblastoma data set |
| PGSEA | Parametric Gene Set Enrichment Analysis |
| readGmt | readGmt |
| readSmc | Read SMC files |
| scanSmc | Scan through smc objects |
| smc-class | Read SMC files |
| smcPlot | Plot PGSEA results |
| VAIgsc | Molecular Concepts (Gene Sets) prepared at VAI |
| VAImcs | Molecular Concepts prepared at VAI |
| writeGmt | writeGmt |
| writeSmc | writeSmc |