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| pbcmcPackage-package | Permutation-Based Confidence for Molecular Classification (pbcmc) |
| annotation | Accessors for MolecularPermutationClassifier child class slots |
| annotation-method | Accessors for MolecularPermutationClassifier child class slots |
| annotation<- | Accessors for MolecularPermutationClassifier child class slots |
| annotation<--method | Accessors for MolecularPermutationClassifier child class slots |
| as | 'PAM50' high level coerce functions |
| as.PAM50 | 'PAM50' high level coerce functions |
| as.PAM50-method | 'PAM50' high level coerce functions |
| as.PAM50-methods | 'PAM50' high level coerce functions |
| classification | Accessors for MolecularPermutationClassifier child class slots |
| classification-method | Accessors for MolecularPermutationClassifier child class slots |
| classification-methods | Accessors for MolecularPermutationClassifier child class slots |
| classify | Virtual functions for MolecularPermutationClassifier hierarchy |
| classify-method | 'classify' subjects with PAM50 molecular signature |
| classify-methods | Virtual functions for MolecularPermutationClassifier hierarchy |
| databaseReport | Virtual functions for MolecularPermutationClassifier hierarchy |
| databaseReport-method | PAM50 permutation test results reports |
| databaseReport-methods | Virtual functions for MolecularPermutationClassifier hierarchy |
| exprs | Accessors for MolecularPermutationClassifier child class slots |
| exprs-method | Accessors for MolecularPermutationClassifier child class slots |
| exprs<- | Accessors for MolecularPermutationClassifier child class slots |
| exprs<--method | Accessors for MolecularPermutationClassifier child class slots |
| filtrate | Virtual functions for MolecularPermutationClassifier hierarchy |
| filtrate-method | 'filtrate' centroid genes from PAM50 classification |
| filtrate-methods | Virtual functions for MolecularPermutationClassifier hierarchy |
| loadBCDataset | MolecularPermutationClassifier high level constructor |
| loadBCDataset-method | MolecularPermutationClassifier high level constructor |
| loadBCDataset-methods | MolecularPermutationClassifier high level constructor |
| MolecularPermutationClassifier-class | Class 'MolecularPermutationClassifier' S4 implementation in R |
| PAM50 | PAM50 S4 implementation in R |
| PAM50-class | PAM50 S4 implementation in R |
| pam50centroids | Example PAM50 objects for pbcmc package |
| parameters | Accessors for MolecularPermutationClassifier child class slots |
| parameters-method | Accessors for MolecularPermutationClassifier child class slots |
| parameters-methods | Accessors for MolecularPermutationClassifier child class slots |
| parameters<- | Accessors for MolecularPermutationClassifier child class slots |
| parameters<--method | Accessors for MolecularPermutationClassifier child class slots |
| parameters<--methods | Accessors for MolecularPermutationClassifier child class slots |
| pbcmcPackage | Permutation-Based Confidence for Molecular Classification (pbcmc) |
| permutate | Virtual functions for MolecularPermutationClassifier hierarchy |
| permutate-method | 'permutate' subject gene-expression for PAM50 confidence |
| permutate-methods | Virtual functions for MolecularPermutationClassifier hierarchy |
| permutation | Accessors for MolecularPermutationClassifier child class slots |
| permutation-method | Accessors for MolecularPermutationClassifier child class slots |
| permutation-methods | Accessors for MolecularPermutationClassifier child class slots |
| show | 'Show' a MolecularPermutationClassifier subclass object |
| show-method | 'Show' a MolecularPermutationClassifier subclass object |
| subjectReport | Virtual functions for MolecularPermutationClassifier hierarchy |
| subjectReport-method | PAM50 permutation test results reports |
| subjectReport-methods | Virtual functions for MolecularPermutationClassifier hierarchy |
| subtypes | Virtual functions for MolecularPermutationClassifier hierarchy |
| subtypes-method | Subject 'subtypes' for PAM50 adaptation with permuted results. |
| subtypes-methods | Virtual functions for MolecularPermutationClassifier hierarchy |
| summary-method | PAM50 permutation test results reports |
| targets | Accessors for MolecularPermutationClassifier child class slots |
| targets-method | Accessors for MolecularPermutationClassifier child class slots |
| targets-methods | Accessors for MolecularPermutationClassifier child class slots |
| targets<- | Accessors for MolecularPermutationClassifier child class slots |
| targets<--method | Accessors for MolecularPermutationClassifier child class slots |
| targets<--methods | Accessors for MolecularPermutationClassifier child class slots |