| aa | The 'Proteins' Class for Proteomics Data And Meta-Data |
| aa-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| acols | The 'Proteins' Class for Proteomics Data And Meta-Data |
| addIdentificationData-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| addPeptideFragments | The 'Proteins' Class for Proteomics Data And Meta-Data |
| addPeptideFragments-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| avarLabels | The 'Proteins' Class for Proteomics Data And Meta-Data |
| avarLabels-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| calculateHeavyLabels | Calculate heavy labeled peptides |
| class:Proteins | The 'Proteins' Class for Proteomics Data And Meta-Data |
| cleave-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| etrid2grl | From a transcript identifier to 'GRanges' object |
| isCleaved | The 'Proteins' Class for Proteomics Data And Meta-Data |
| isForward | Are all the ranges on the same strand |
| isReverse | Are all the ranges on the same strand |
| length-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| metadata-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| metadata<--method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| names-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| p | Data accompanying the 'Pbase' package |
| pcols | The 'Proteins' Class for Proteomics Data And Meta-Data |
| pfeatures | The 'Proteins' Class for Proteomics Data And Meta-Data |
| pfeatures-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| pfilter | The 'Proteins' Class for Proteomics Data And Meta-Data |
| pfilter-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| plot-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| plotAsAnnotationTrack | Plot gene region and annotation tracks |
| plotAsGeneRegionTrack | Plot gene region and annotation tracks |
| pms | Data accompanying the 'Pbase' package |
| Pparams | Class '"Pparams"' |
| Pparams-class | Class '"Pparams"' |
| pranges | The 'Proteins' Class for Proteomics Data And Meta-Data |
| pranges-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| pranges<- | The 'Proteins' Class for Proteomics Data And Meta-Data |
| pranges<--method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| proteinCoding | Only keep protein coding ranges |
| proteinCoding-method | Only keep protein coding ranges |
| proteinCoding-methods | Only keep protein coding ranges |
| proteinCoverage | The 'Proteins' Class for Proteomics Data And Meta-Data |
| Proteins | The 'Proteins' Class for Proteomics Data And Meta-Data |
| Proteins-class | The 'Proteins' Class for Proteomics Data And Meta-Data |
| Proteins-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| proteotypic | The 'Proteins' Class for Proteomics Data And Meta-Data |
| pvarLabels | The 'Proteins' Class for Proteomics Data And Meta-Data |
| pvarLabels-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| rmEmptyRanges | The 'Proteins' Class for Proteomics Data And Meta-Data |
| seqnames-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| show-method | Class '"Pparams"' |
| show-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| [-method | The 'Proteins' Class for Proteomics Data And Meta-Data |
| [[-method | The 'Proteins' Class for Proteomics Data And Meta-Data |