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| addReference | Add reference species |
| addReference-method | Class '"Path2PPI"' |
| ai | Data set to predict autophagy induction in _Podospora anserina_ |
| getHybridNetwork | Get hybrid network of the predicted PPI |
| getHybridNetwork-method | Class '"Path2PPI"' |
| getPPI | Get predicted PPI |
| getPPI-method | Class '"Path2PPI"' |
| homologyScore | Computes homology scores |
| human.ai.irefindex | Data set to predict autophagy induction in _Podospora anserina_ |
| human.ai.proteins | Data set to predict autophagy induction in _Podospora anserina_ |
| initialize-method | Class '"Path2PPI"' |
| pa2human.ai.homologs | Data set to predict autophagy induction in _Podospora anserina_ |
| pa2yeast.ai.homologs | Data set to predict autophagy induction in _Podospora anserina_ |
| Path2PPI | Class '"Path2PPI"' |
| Path2PPI-class | Class '"Path2PPI"' |
| plot.Path2PPI | Plots the predicted PPI |
| plot.Path2PPI-method | Class '"Path2PPI"' |
| predictPPI | Prediction of the PPI |
| predictPPI-method | Class '"Path2PPI"' |
| removeReference | Remove reference species |
| removeReference-method | Class '"Path2PPI"' |
| show-method | Class '"Path2PPI"' |
| showInteraction | Information about an interaction |
| showInteraction-method | Class '"Path2PPI"' |
| showInteraction-methods | Information about an interaction |
| showReferences | Information about reference species |
| showReferences-method | Class '"Path2PPI"' |
| yeast.ai.irefindex | Data set to predict autophagy induction in _Podospora anserina_ |
| yeast.ai.proteins | Data set to predict autophagy induction in _Podospora anserina_ |