Predict metabolic pathway activity based on metabolomics data

Documentation for package ‘PAPi’ version 1.16.0

PAPi-package	Pathway Activity Profiling
addKeggCodes	In a data frame, it substitutes the name of compounds by their respective KEGG codes.
buildDatabase	Build a local database containing the required information from KEGG (Kyoto Encyclopedia of Genes and Genomes) database.
keggLibrary	An example of the library mapping name of compounds to their respective KEGG codes.
metabolomicsData	An example of metabolomics data set used by 'addKeggCodes'.
PAPi	Pathway Activity Profiling
papi	papi - Pathway Activity Profiling
papiData	An example of the data frame produced by 'addKeggCodes' and used by 'papi'.
papiHtest	Apply ANOVA or t-test to results produced by 'papi'.
papiLine	papiLine generates a line graph of results obtained using 'papi' or 'papiHtest'.
papiResults	An example of the data frame produced by 'papi'.