| NTW-package | Gene interaction network and perturbation targets predictions |
| A.estimation.Srow | Estimation of a single row in matrix A with the perturbation targets matrix P known |
| AP.estimation.Srow | Estimation of a single row in gene interaction matrix A and perturbation targets matrix P |
| backward | Approaches to use a priori known gene association information for a single row estimation in matrix A |
| comb.matrix | Create all combinations of vectors |
| forward | Approaches to use a priori known gene association information for a single row estimation in matrix A |
| method.geo | Regression methods to estimate a single row in A with fixed perturbations |
| method.ml | Regression methods to estimate a single row in A with fixed perturbations |
| method.sse | Regression methods to estimate a single row in A with fixed perturbations |
| NTW | Estimation of gene interaction matrix A and perturbation targets matrix P |
| P.preestimation | Pre-estimation of the transcriptional pertubation targets matrix P |
| sos.data | SOS pathway perturbation data |