| normR-package | Enrichment, Difference and Regime Calling in ChIP-seq data. |
| BamsignalsConfig | Container for configuration of read counting with bamsignals in normR |
| BamsignalsCountConfig | Container for configuration of read counting with bamsignals in normR |
| configPairedEnd | Container for configuration of read counting with bamsignals in normR |
| configSingleEnd | Container for configuration of read counting with bamsignals in normR |
| countConfigPairedEnd | Container for configuration of read counting with bamsignals in normR |
| countConfigPairedEnd-method | Container for configuration of read counting with bamsignals in normR |
| countConfigSingleEnd | Container for configuration of read counting with bamsignals in normR |
| countConfigSingleEnd-method | Container for configuration of read counting with bamsignals in normR |
| differenceCall | Difference Calling between conditional ChIP-seq data in normR with diffR |
| DifferenceCalling | Difference Calling between conditional ChIP-seq data in normR with diffR |
| DifferentialPeakCalling | Enrichment, Difference and Regime Calling in ChIP-seq data. |
| diffR | Difference Calling between conditional ChIP-seq data in normR with diffR |
| diffr | Difference Calling between conditional ChIP-seq data in normR with diffR |
| diffR-generic | Difference Calling between conditional ChIP-seq data in normR with diffR |
| diffR-method | Difference Calling between conditional ChIP-seq data in normR with diffR |
| enrichmentCall | Enrichment Calling on ChIP-seq data in normR with enrichR |
| EnrichmentCalling | Enrichment Calling on ChIP-seq data in normR with enrichR |
| enrichR | Enrichment Calling on ChIP-seq data in normR with enrichR |
| enrichr | Enrichment Calling on ChIP-seq data in normR with enrichR |
| enrichR-generic | Enrichment Calling on ChIP-seq data in normR with enrichR |
| enrichR-method | Enrichment Calling on ChIP-seq data in normR with enrichR |
| exportR | Container for a fit done with normR |
| exportR-method | Container for a fit done with normR |
| getBamsignalsFilter | Container for configuration of read counting with bamsignals in normR |
| getClasses | Container for a fit done with normR |
| getClasses-method | Container for a fit done with normR |
| getCounts | Container for a fit done with normR |
| getCounts-method | Container for a fit done with normR |
| getEnrichment | Container for a fit done with normR |
| getEnrichment-method | Container for a fit done with normR |
| getFilter | Container for configuration of read counting with bamsignals in normR |
| getFilter-method | Container for configuration of read counting with bamsignals in normR |
| getNormRCountConfigFilter | Container for configuration of read counting with bamsignals in normR |
| getPosteriors | Container for a fit done with normR |
| getPosteriors-method | Container for a fit done with normR |
| getPvalues | Container for a fit done with normR |
| getPvalues-method | Container for a fit done with normR |
| getQvalues | Container for a fit done with normR |
| getQvalues-method | Container for a fit done with normR |
| getRanges | Container for a fit done with normR |
| getRanges-method | Container for a fit done with normR |
| length-method | Container for a fit done with normR |
| normR | Enrichment, Difference and Regime Calling in ChIP-seq data. |
| normr | Enrichment, Difference and Regime Calling in ChIP-seq data. |
| NormRCountConfig | Container for configuration of read counting with bamsignals in normR |
| NormRCountConfig-class | Container for configuration of read counting with bamsignals in normR |
| NormRFit | Container for a fit done with normR |
| NormRfit | Container for a fit done with normR |
| normRFit | Container for a fit done with normR |
| normrfit | Container for a fit done with normR |
| NormRFit-class | Container for a fit done with normR |
| PeakCalling | Enrichment, Difference and Regime Calling in ChIP-seq data. |
| plot-method | Container for a fit done with normR |
| plot.NormRFit | Container for a fit done with normR |
| print-method | Container for configuration of read counting with bamsignals in normR |
| print-method | Container for a fit done with normR |
| regimeCall | Regime Enrichment Calling for ChIP-seq data in normR with regimeR |
| RegimeCalling | Regime Enrichment Calling for ChIP-seq data in normR with regimeR |
| regimeR | Regime Enrichment Calling for ChIP-seq data in normR with regimeR |
| regimer | Regime Enrichment Calling for ChIP-seq data in normR with regimeR |
| regimeR-generic | Regime Enrichment Calling for ChIP-seq data in normR with regimeR |
| regimeR-method | Regime Enrichment Calling for ChIP-seq data in normR with regimeR |
| show-method | Container for configuration of read counting with bamsignals in normR |
| show-method | Container for a fit done with normR |
| summary-method | Container for a fit done with normR |