Call wide peaks for sequencing data

Documentation for package ‘NADfinder’ version 1.2.0

NADfinder-package	Call peaks for nucleolar-associated domains (NADs) sequencing data
backgroundCorrection	Correct ratios for background
butterFilter	Low pass filter on ratios by butterworth filter
callPeaks	call peaks for ratios of repeats
countByOverlaps	Count overlapping genomic ranges
cumulativePercentage	Plot the cumulative percentage tag allocation in sample
exportSignals	output signals to file
getCorrelations	get correlations for replicates
groupZscores	Calculate z-scores for each peak
log2ratio	calculate the log2 transformed ratios
log2se	calculate the log2 transformed ratios for SummarizedExperiment class
NADfinder	Call peaks for nucleolar-associated domains (NADs) sequencing data
peakdet	Detect peak positions
plotSig	plot signals with ideograms
single.count	counts data for single experiment of chromosome 18
smoothRatiosByChromosome	smooth the ratios by chromosome
tileCount	Perform overlap queries between reads and genome by windows
trimPeaks	Trim peaks
triplicates.counts	counts data for triplicates of chromosome 18
zscoreOverBck	Z-scores over the background