Resampling-based multiple hypothesis testing

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Documentation for package ‘multtest’ version 2.50.0

• DESCRIPTION file.

Help Pages

ABH.h0	Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
as.list	Methods for MTP and EBMTP objects in Package 'multtest'
as.list-method	Methods for MTP and EBMTP objects in Package 'multtest'
as.list-methods	Methods for MTP and EBMTP objects in Package 'multtest'
dens.est	Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
EBMTP	A function to perform empirical Bayes resampling-based multiple hypothesis testing
EBMTP-class	Class "EBMTP", classes and methods for empirical Bayes multiple testing procedure output
EBMTP-method	Class "EBMTP", classes and methods for empirical Bayes multiple testing procedure output
EBMTP-methods	Methods for MTP and EBMTP objects in Package 'multtest'
ebmtp2mtp	Methods for MTP and EBMTP objects in Package 'multtest'
ebmtp2mtp-method	Methods for MTP and EBMTP objects in Package 'multtest'
ebmtp2mtp-methods	Methods for MTP and EBMTP objects in Package 'multtest'
EBupdate	Methods for MTP and EBMTP objects in Package 'multtest'
EBupdate-method	Methods for MTP and EBMTP objects in Package 'multtest'
EBupdate-methods	Methods for MTP and EBMTP objects in Package 'multtest'
G.VS	Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
golub	Gene expression dataset from Golub et al. (1999)
golub.cl	Gene expression dataset from Golub et al. (1999)
golub.gnames	Gene expression dataset from Golub et al. (1999)
Hsets	Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
mt.maxT	Step-down maxT and minP multiple testing procedures
mt.minP	Step-down maxT and minP multiple testing procedures
mt.plot	Plotting results from multiple testing procedures
mt.rawp2adjp	Adjusted p-values for simple multiple testing procedures
mt.reject	Identity and number of rejected hypotheses
mt.sample.label	Permutation distribution of test statistics and raw (unadjusted) p-values
mt.sample.rawp	Permutation distribution of test statistics and raw (unadjusted) p-values
mt.sample.teststat	Permutation distribution of test statistics and raw (unadjusted) p-values
mt.teststat	Computing test statistics for each row of a data frame
mt.teststat.num.denum	Computing test statistics for each row of a data frame
MTP	A function to perform resampling-based multiple hypothesis testing
MTP-class	Class "MTP", classes and methods for multiple testing procedure output
MTP-methods	Methods for MTP and EBMTP objects in Package 'multtest'
mtp2ebmtp	Methods for MTP and EBMTP objects in Package 'multtest'
mtp2ebmtp-method	Methods for MTP and EBMTP objects in Package 'multtest'
mtp2ebmtp-methods	Methods for MTP and EBMTP objects in Package 'multtest'
plot	Methods for MTP and EBMTP objects in Package 'multtest'
plot-method	Methods for MTP and EBMTP objects in Package 'multtest'
plot-methods	Methods for MTP and EBMTP objects in Package 'multtest'
print-method	Methods for MTP and EBMTP objects in Package 'multtest'
print-methods	Methods for MTP and EBMTP objects in Package 'multtest'
print.MTP	Methods for MTP and EBMTP objects in Package 'multtest'
summary	Methods for MTP and EBMTP objects in Package 'multtest'
summary-method	Methods for MTP and EBMTP objects in Package 'multtest'
summary-methods	Methods for MTP and EBMTP objects in Package 'multtest'
update	Methods for MTP and EBMTP objects in Package 'multtest'
update-method	Methods for MTP and EBMTP objects in Package 'multtest'
update-methods	Methods for MTP and EBMTP objects in Package 'multtest'
VScount	Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
[-method	Methods for MTP and EBMTP objects in Package 'multtest'
[-methods	Methods for MTP and EBMTP objects in Package 'multtest'