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| MultiDataSet-package | MultiDataSet: Implementation of the BRGE's basic classes |
| add_eset | Method to add an 'eSet' to 'MultiDataSet'. |
| add_eset-method | MultiDataSet instances |
| add_genexp | Method to add an expression microarray dataset to 'MultiDataSet'. |
| add_genexp-method | MultiDataSet instances |
| add_methy | Method to add a slot of methylation to 'MultiDataSet'. |
| add_methy-method | MultiDataSet instances |
| add_rnaseq | Method to add an expression RNA seq dataset to 'MultiDataSet'. |
| add_rnaseq-method | MultiDataSet instances |
| add_rse | Method to add a 'RangedSummarizedExperiment' to 'MultiDataSet'. |
| add_rse-method | MultiDataSet instances |
| add_se | Method to add a 'SummarizedExperiment' to 'MultiDataSet'. |
| add_se-method | MultiDataSet instances |
| add_snps | Method to add a slot of SNPs to 'MultiDataSet'. |
| add_snps-method | MultiDataSet instances |
| add_table | Method to add a 'matrix' to 'MultiDataSet'. |
| add_table-method | MultiDataSet instances |
| as.list | MultiDataSet instances |
| as.list-method | MultiDataSet instances |
| assayData | MultiDataSet instances |
| assayData-method | MultiDataSet instances |
| chrNumToChar | Convert chr numbers to chr strings |
| commonIds | Get the name of the ids common to all datasets |
| commonIds-method | MultiDataSet instances |
| commonSamples | Method to select samples that are present in all datasets. |
| commonSamples-method | MultiDataSet instances |
| createMultiDataSet | MultiDataSet instances |
| create_resultset | Class ResultSet |
| dims | MultiDataSet instances |
| dims-method | MultiDataSet instances |
| fData | MultiDataSet instances |
| fData-method | MultiDataSet instances |
| fData-method | Class ResultSet |
| featureData | MultiDataSet instances |
| featureData-method | MultiDataSet instances |
| getAssociation | Method to extrat feature result from a ResultSet |
| getAssociation-method | Class ResultSet |
| lambdaClayton | Lambda Calculation for a vector of P-Values |
| length | MultiDataSet instances |
| length-method | MultiDataSet instances |
| length-method | Class ResultSet |
| mae2mds | Convert a 'MultiAssayExperiment' to a 'MultiDataSet' |
| mds2mae | Convert a 'MultiDataSet' to a 'MultiAssayExperiment' |
| MultiDataSet | MultiDataSet: Implementation of the BRGE's basic classes |
| MultiDataSet-class | MultiDataSet instances |
| MultiDataSet-methods | MultiDataSet instances |
| MultiDataSet-methods, | MultiDataSet instances |
| names | MultiDataSet instances |
| names-method | MultiDataSet instances |
| names-method | Class ResultSet |
| ncol | MultiDataSet instances |
| ncol-method | MultiDataSet instances |
| nrow | MultiDataSet instances |
| nrow-method | MultiDataSet instances |
| opt | Method to get the options sued to create the ResultSet |
| opt-method | Class ResultSet |
| pData | MultiDataSet instances |
| pData-method | MultiDataSet instances |
| phenoData | MultiDataSet instances |
| phenoData-method | MultiDataSet instances |
| plot-method | Class ResultSet |
| qq_plot | Function to draw a QQ Plot from a vector of numbers |
| ResultSet | Class ResultSet |
| ResultSet-class | Class ResultSet |
| ResultSet-methods | Class ResultSet |
| rowRanges | MultiDataSet instances |
| rowRanges-method | MultiDataSet instances |
| rowRangesElements | Get the name of the datasets that have rowRanges |
| rowRangesElements-method | MultiDataSet instances |
| rset | Example 'ResultSet' |
| sampleNames-method | MultiDataSet instances |
| subset-method | MultiDataSet instances |
| varLabels-method | Class ResultSet |
| volcano_plot | Function to draw a Volcano Plot |
| w_iclusterplus | Apply iClusterPlus clustering method to a MultiDataSet object |
| w_iclusterplus-method | MultiDataSet instances |
| w_mcia | Apply mcia integration method to a MultiDataSet object |
| w_mcia-method | MultiDataSet instances |
| [ | MultiDataSet instances |
| [-method | MultiDataSet instances |
| [[-method | MultiDataSet instances |