| integrateMethod | Integrate method for identifying miRNA sponge interactions by integrating different methods |
| moduleDEA | Disease enrichment analysis of modules |
| moduleFEA | Functional GO, KEGG and Reactome enrichment analysis of modules |
| moduleSurvival | Survival analysis of modules |
| netModule | Identifying miRNA sponge modules from network |
| querymiRTargetbinding | Query miRNA-target interactions by combining expression data and putative miRNA-target interactions |
| spongeMethod | Identifying miRNA sponge interactions using spongeMethod |
| spongeValidate | Validation of computationally predicted miRNA sponge interactions |