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| augmented_pathways | Signaling pathways augmented with miRNA. |
| GSE43592_miRNA | Top table of preprocessed miRNA of GSE43592 dataset. |
| GSE43592_mRNA | Top table of preprocessed mRNA of GSE43592 dataset. |
| integrate_mir | Produce augmented pathways |
| kegg_pathways | List of KEGG signaling pathways of human. |
| mirTarBase | MicroRNA-target interactions in human. |
| names_pathways | List of KEGG signaling pathways' names. |
| pathways2pdf | Export augmented pathways to pdf |
| plot_augmented_pathway | Plotting of augmented pathway |
| plot_change | Plotting the change in pathways order |
| smallest_pathway | Get the smallest pathway |