| aracne | Algorithm for the Reconstruction of Accurate Cellular NEtworks |
| auc.pr | Visualize Results |
| auc.roc | Visualize Results |
| build.mim | Build Mutual Information Matrix |
| clr | Context Likelihood or Relatedness Network |
| fscores | Visualize Results |
| minet | Mutual Information Network |
| mrnet | Maximum Relevance Minimum Redundancy |
| mrnetb | Maximum Relevance Minimum Redundancy Backward |
| pr | Visualize Results |
| rates | Visualize Results |
| show.pr | Visualize Results |
| show.roc | Visualize Results |
| syn.data | Simulated Gene Expression Data |
| syn.net | SynTReN Source Network |
| validate | Inference Validation |
| vis.res | Visualize Results |