| MIMOSA-package | MIMOSA: Mixture Models for Single Cell Assays |
| .fitMCMC | Fit the MIMOSA model via MCMC |
| asinh_trans | asinh_trans |
| BetaMixResult-class | The output of fitting Beta-Binomial EM implementation 'BetaMix'. |
| boxplotMIMOSAResultList | boxplotMIMOSAResultList |
| combine.MIMOSA | Combine MIMOSAResultList objects |
| ConstructMIMOSAExpressionSet | A wrapper for constructing an Expression Set for MIMOSA |
| countsTable | Extract the table of counts from a MIMOSA model |
| countsTable-method | Extract the table of counts from a MIMOSA model |
| countsTable.MIMOSAResultList | Extract the table of counts from a MIMOSA model |
| fdr | Compute the fdr (q-value) from posterior probabilities |
| fdr.matrix | Compute the fdr (q-value) from posterior probabilities |
| fdr.MIMOSAResult | Compute the fdr (q-value) from posterior probabilities |
| fdr.MIMOSAResultList | Compute the fdr (q-value) from posterior probabilities |
| getW | Extract the posterior probabilities of response from a MIMOSA model |
| getW.MIMOSAResult | Extract the posterior probabilities of response from a MIMOSA model |
| getW.MIMOSAResultList | Extract the posterior probabilities of response from a MIMOSA model |
| getZ | Extract the posterior probabilities of response from a MIMOSA model |
| getZ.MIMOSAResult | Extract the posterior probabilities of response from a MIMOSA model |
| getZ.MIMOSAResultList | Extract the posterior probabilities of response from a MIMOSA model |
| ICS | Stimulated and unstimulated T-cell counts for an ICS assay |
| MDMix | EM fitting of the Multinomial Dirichlet MIMOSA model. |
| MIMOSA | Fit a MIMOSA Model |
| MIMOSA-method | Fit a MIMOSA Model |
| MIMOSAExpressionSet | Construct an ExpressionSet for MIMOSA |
| MIMOSAResult | Stores the result of a MIMOSA fitted model |
| MIMOSAResult-class | Stores the result of a MIMOSA fitted model |
| pData-method | pData extract the phenoData table from a MIMOSA result |
| pData.MIMOSAResultList | pData extract the phenoData table from a MIMOSA result |
| print.MIMOSAResultList | Print a MIMOSAResultList |
| show | show |
| show-method | show |
| volcanoPlot | Volcano plot for a MIMOSA model |