Methylclock - DNA methylation-based clocks

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Documentation for package ‘methylclock’ version 1.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

checkClocks	Check wheter input data contains the required CpGs for the implemented clocks.
checkClocksGA	Check wheter input data contains the required CpGs for the implemented clocks for Gestational Age.
commonClockCpgs	Get common CpGs
DNAmAge	DNAm age estimation using different DNA methylation clocks.
DNAmGA	Gestational DNAm age estimation using different DNA methylation clocks.
getCellTypeReference	Get cell type reference
load_DNAmGA_Clocks_data	Loads DNAmGA clock data from methylclockData
load_DNAm_Clocks_data	Loads DNAm clock data from methylclockData
meffilEstimateCellCountsFromBetas	Estimate cell counts for a beta matrix from a reference
meffilListCellTypeReferences	List of available cell type references
methylclock	methylclock
plotCorClocks	Plot correlation among DNAm clockx
plotDNAmAge	Plot DNAm age estimation vs chronological age.
progress_data	PROGRESS cohor data
progress_vars	PROGRESS cohort variables