| GOhuman | GOhuman |
| GOmouse | GOmouse |
| MetaNeighbor | Runs MetaNeighbor |
| MetaNeighborUS | Runs unsupervised version of MetaNeighbor |
| mn_data | mn_data |
| neighborVoting | Runs the neighbor voting algorithm. |
| topHits | Find reciprocal top hits |
| variableGenes | Identify a highly variable gene set |