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| BayesFit-package | BayesFit |
| essR-package | Global optimization algorithm for MINLPs based on Scatter Search |
| MEIGOR-package | Global optimization Toolbox |
| BayesFit | BayesFit |
| CeSSR | Global optimization algorithm for MINLPs based on Scatter Search using a Cooperative Strategy |
| CeVNSR | Global optimization algorithm for MINLPs based on VNS using a Cooperative Strategy |
| cnolist | A CNOlist from CellNOptR paclage |
| cur_params | Current values of all model parameters |
| dhc | Local search algorithm within eSS |
| essR | Global optimization algorithm for MINLPs based on Scatter Search |
| essR_multistart | Multistart function for eSS |
| eucl_dist | Computes the euclidean distance between the rows of two different matrices |
| ith_essR | Auxiliary function to perform parallel runs |
| ith_VNSR | Auxiliary function to perform parallel runs |
| MEIGO | MEIGO main function |
| model | A model from CellNoptR |
| nls_fobj | Auxiliary function to evaluate constraints |
| optim_fobj | Gateway function to evaluate the objective function when the local solvers are invoked. |
| paramsOpt | Optimal parameters for simulation with CNORode |
| runBayesFit | Running the BayesFit optimisation |
| rvnds_hamming | Main VNS function |
| rvnds_local | Local search in VNS |
| solnp_eq | Gateway function to evaluate the equality constraints when solnp is invoked as local solver |
| solnp_fobj | Gateway function to evaluate the objective function when solnp is invoked as local solver |
| solnp_ineq | Gateway function to evaluate the inequality constraints when solnp is invoked as local solver |
| ssm_beyond | Function that expands the search direction when a good offspring solution has been found |
| ssm_defaults | Sets the default options for eSSR |
| ssm_evalfc | Gateway function to evaluate the objective function in essR |
| ssm_isdif2 | Calculates relative errors between two vectors |
| ssm_localsolver | Configure local solver |
| ssm_optset | Assigns values to the options defined by the user |
| ssm_penalty_function | Calculates the penalized objective function in constrained problems |
| ssm_round_int | Rounds variables declared as integer of binary |
| vns_defaults | Default options for VNS |
| vns_optset | Set VNS options |