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| AMS | Class "MEDMEset" |
| AMS-method | Class "MEDMEset" |
| CG | Class "MEDMEset" |
| CG-method | Class "MEDMEset" |
| CGcount | Determining the count of CpG dinucleotides for a set of genomic locations |
| CGcounts | Class "MEDMEset" |
| chr | Class "MEDMEset" |
| chr-method | Class "MEDMEset" |
| initialize-method | Class "MEDMEset" |
| logR | Class "MEDMEset" |
| logR-method | Class "MEDMEset" |
| MEDME | Determining the logistic model of MeDIP enrichment in respect to the expected DNA methylation level |
| MEDME.predict | Applying the logistic model on MeDIP enrichment data |
| MEDME.readFiles | reading sgr or gff files for MEDME |
| MEDME.writeFiles | writeFiles sgr or gff files from MEDME output |
| MEDMEset-class | Class "MEDMEset" |
| org | Class "MEDMEset" |
| org-method | Class "MEDMEset" |
| organism | Class "MEDMEset" |
| pos | Class "MEDMEset" |
| pos-method | Class "MEDMEset" |
| RMS | Class "MEDMEset" |
| RMS-method | Class "MEDMEset" |
| show-method | Class "MEDMEset" |
| smooth | Determining weighted MeDIP data |
| smoothed | Class "MEDMEset" |
| smoothed-method | Class "MEDMEset" |
| testMEDMEset | Dataset of class MEDMEset for testing MEDME |
| [-method | Class "MEDMEset" |