Analytical Tools for MassArray Data

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Documentation for package ‘MassArray’ version 1.32.0

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$-method Class "MassArrayData"
$-method Class "MassArrayFragment"
$-method Class "MassArrayPeak"
$-method Class "MassArraySpectrum"
$<--method Class "MassArrayData"
$<--method Class "MassArrayFragment"
$<--method Class "MassArrayPeak"
$<--method Class "MassArraySpectrum"
ampliconPrediction Amplicon prediction
analyzeCpGs Analyze CG methylation
bisConvert Bisulphite conversion
calcMeth Calculate percent methylation
calcMW Calculate molecular weight
calcPercentAdduct Calculate percent salt adducts
calcPercentConversion Calculate percent conversion
combine Combine MassArrayData objects
combine-method Combine MassArrayData objects (methods)
combine-methods Combine MassArrayData objects (methods)
convControl Conversion control
countCGs Count number of CGs
createWiggle Create wiggle track
estimatePrimerDimer Estimate Primer Dimers
evaluateSNPs Evaluate SNPs
expandSequence Expand nucleotide sequence
findCollisions Find peak collisions
findFragments Find fragments
findPeaks Find peaks
identifySNPs Identify SNPs
importEpiTyperData Import EpiTyper data (v.1.0)
importEpiTyperData.new Import EpiTyper data (v.1.0.5)
initialize-method Class "MassArrayData"
initialize-method Class "MassArrayFragment"
initialize-method Class "MassArrayPeak"
initialize-method Class "MassArraySpectrum"
inSilicoFragmentation In silico fragmentation
isAssayable Is assayable?
MassArray.example.data MassArray Data object
MassArrayData-class Class "MassArrayData"
MassArrayFragment-class Class "MassArrayFragment"
MassArrayPeak-class Class "MassArrayPeak"
MassArraySpectrum-class Class "MassArraySpectrum"
numCollisions Count peak collisions
plot.MassArrayData Plot MassArrayData
position Operate on positional information
position-method Operate on positional information (methods)
position-methods Operate on positional information (methods)
position<- Operate on positional information
position<--method Operate on positional information (methods)
revComplement Reverse complement
revComplement-method Reverse complement (methods)
revComplement-methods Reverse complement (methods)
rnaDigest RNA digest
samples Operate on sample name(s)
samples-method Operate on sample name(s) (methods)
samples-methods Operate on sample name(s) (methods)
samples<- Operate on sample name(s)
samples<--method Operate on sample name(s) (methods)
sum.MassArraySpectrum Sum MassArraySpectrum objects
[-method Class "MassArrayData"