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| array2ade4 | Converts microarray input data into a data frame suitable for analysis in ADE4. |
| bet.coinertia | Between class coinertia analysis |
| between.graph | Plot 1D graph of results from between group analysis |
| bga | Between group analysis |
| bga.jackknife | Jackknife between group analysis |
| bga.suppl | Between group analysis with supplementary data projection |
| cia | Coinertia analysis: Explore the covariance between two datasets |
| commonMap | Highlight common points between two 1D plots |
| comparelists | Return the intersect, difference and union between 2 vectors |
| do3d | Generate 3D graph(s) using scatterplot3d |
| getcol | Specialised colour palette with set of 21 maximally contrasting colours |
| graph1D | Plot 1D graph of axis from multivariate analysis |
| heatplot | Draws heatmap with dendrograms. |
| html3D | Produce web page with a 3D graph that can be viewed using Chime web browser plug-in, and/or a pdb file that can be viewed using Rasmol |
| khan | Microarray gene expression dataset from Khan et al., 2001. Subset of 306 genes. |
| NCI60 | Microarray gene expression profiles of the NCI 60 cell lines |
| ord | Ordination |
| overview | Draw boxplot, histogram and hierarchical tree of gene expression data |
| plot.bga | Between group analysis |
| plot.cia | Coinertia analysis: Explore the covariance between two datasets |
| plot.ord | Ordination |
| plot.suppl | Projection of supplementary data onto axes from a between group analysis |
| plotarrays | Graph xy plot of variable (array) projections from ordination, between group analysis or coinertia analysis. |
| plotgenes | Graph xy plot of variable (gene) projections from PCA or COA. Only label variables at ends of axes |
| prettyDend | Draw hierarchical tree of gene expression data with a colorbar for numerous class vectors |
| print.comparelists | Return the intersect, difference and union between 2 vectors |
| randomiser | Randomly reassign training and test samples |
| rotate3d | Generate 3D graph(s) using scatterplot3d |
| sumstats | Summary statistics on xy co-ordinates, returns the slopes and distance from origin of each co-ordinate. |
| suppl | Projection of supplementary data onto axes from a between group analysis |
| topgenes | Topgenes, returns a list of variables at the ends (positive, negative or both) of an axis |