| buildMACAT | Create MACAT list from objects in workspace |
| compute.sliding | Compute and plot smoothing of expression values or scores along the chromosome |
| discreteKernelize | Discretize and smooth expression values |
| discretize | Discretize expression values |
| discretize.tscores | Discretize regularized t-scores |
| discretizeAllClasses.tscores | Discretize regularized t-scores |
| discretizeChromosome | Discretize expression values |
| discretizeOne | Discretize expression values |
| evalScoring | Score differential expression, assess significance, and smooth scores along the chromosome |
| evaluateParameters | Evaluate Performance of Kernel Parameters by Cross-validation |
| getResults | Access results of 'evalScoring' |
| getsteps | Smooth expression values or scores |
| kernelize | Smooth expression values or scores |
| kernelmatrix | Smooth expression values or scores |
| Loader | Read in data and produce MACAT list |
| MACATData | Read in data and produce MACAT list |
| MACATinput | Read in data and produce MACAT list |
| plot.MACATevalScoring | Plot function for MACATevalScoring objects. |
| plot.MACATevP | Evaluate Performance of Kernel Parameters by Cross-validation |
| plotSliding | Compute and plot smoothing of expression values or scores along the chromosome |
| preprocessedLoader | Read in data and produce MACAT list |
| scoring | Compute (regularized) t-scores for gene expression data |
| stjd | Subset Microarray Data from St.Jude Children Research Hospital (USA) |